PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1087160.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 503aa MW: 55304.5 Da PI: 8.2759

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1087160.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.1	6.9e-05	91	111	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+k F r nL+ H r H Pd.00g1087160.m01 91 CEICNKGFQREQNLQLHRRGH 111 *******************88 PP
2	zf-C2H2	12.5	0.00045	165	187	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H + + Pd.00g1087160.m01 165 WKCEKCSKRYAVQSDWKAHSKIC 187 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 503 aa Download sequence
MMKGLMGDEN MSNLTCASGD LSASNSSIRN ESSSAGTLYP QQQSSSANDI QQPQQPPPPK 60 KKRNLPGNPD PDAEVIALSP KSLMATNRFL CEICNKGFQR EQNLQLHRRG HNLPWKLKQR 120 TNKEVRKKVY LCPEPTCVHH DPSRALGDLT GIKKHFCRKH GEKKWKCEKC SKRYAVQSDW 180 KAHSKICGTR EYRCDCGTLF SRRDSFITHR AFCDALAQEN STSTAARSAM PASINPLLSS 240 LPQLHTHGLQ GLSVKREQDQ QQQLLPPWLS CLPEGEATAP SGLPSMNMSS PLFSASSFQQ 300 YYSFDHQNPN PSSSSTTTLP DFQQPHTASP HMSATALLQK ASEMGATISK PSHSPMFLKP 360 PSHQAHVSNE AFDDGFGSND NKSSLFHDMM MMSNSFGDQQ VSSAFGDHRQ AFNGIMNYKS 420 MELAQLGRSG TDNNNNDEGL TRDFLGLRAP FSSSAAAAAA ASHGHGDFFN INMAGLDHHV 480 NSSSSSAYNG QQSDHQNQTS WQG

Sequence ? help Back to Top

Protein Sequence Length: 503 aa Download sequence

MMKGLMGDEN MSNLTCASGD LSASNSSIRN ESSSAGTLYP QQQSSSANDI QQPQQPPPPK  60
KKRNLPGNPD PDAEVIALSP KSLMATNRFL CEICNKGFQR EQNLQLHRRG HNLPWKLKQR  120
TNKEVRKKVY LCPEPTCVHH DPSRALGDLT GIKKHFCRKH GEKKWKCEKC SKRYAVQSDW  180
KAHSKICGTR EYRCDCGTLF SRRDSFITHR AFCDALAQEN STSTAARSAM PASINPLLSS  240
LPQLHTHGLQ GLSVKREQDQ QQQLLPPWLS CLPEGEATAP SGLPSMNMSS PLFSASSFQQ  300
YYSFDHQNPN PSSSSTTTLP DFQQPHTASP HMSATALLQK ASEMGATISK PSHSPMFLKP  360
PSHQAHVSNE AFDDGFGSND NKSSLFHDMM MMSNSFGDQQ VSSAFGDHRQ AFNGIMNYKS  420
MELAQLGRSG TDNNNNDEGL TRDFLGLRAP FSSSAAAAAA ASHGHGDFFN INMAGLDHHV  480
NSSSSSAYNG QQSDHQNQTS WQG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	116	128	KLKQRTNKEVRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-109	C2H2 family protein