PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1087710.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 188aa    MW: 20827.3 Da    PI: 7.685
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1087710.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.78.8e-161461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       rg+WT+ Ed++l  ++k +G g W++ +++ g++R++k+c++rw++yl
  Pd.00g1087710.m01 14 RGAWTALEDKILTSYIKAHGEGKWRSLPKRAGLKRCGKSCRLRWLNYL 61
                       89********************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    
MGRSPCCSKQ GLNRGAWTAL EDKILTSYIK AHGEGKWRSL PKRAGLKRCG KSCRLRWLNY  60
LRPDIKRGNI SVIRTKATRL TKVLVPTIPQ IPSDDYNQTA NASSSTNPSE LQARQTQLTD  120
QQVNVGDSTN NLNNNYGCTD EDDDIEAKGG FCNAFQSLPL DEAMINATWT GGNDCDLEDY  180
VDILGIAW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16720.12e-35MYB family protein