PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1087760.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

Trihelix

Protein Properties

Length: 565aa MW: 64123.8 Da PI: 6.9032

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1087760.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	93.2	2.6e-29	380	464	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+++ev+aLi +r+ +e+++++ k+p Weevs+ m + g++rs+k+Ck+kwen+nk+++k+k+++kkr + + +tc+yf+ql+ Pd.00g1087760.m01 380 RWPQSEVKALILVRSGIESKFQEPGVKGPVWEEVSALMGSMGYQRSAKRCKQKWENINKYFRKTKDSAKKR-PHNFKTCSYFNQLD 464 8*******************************************************************8.88889******8 PP

Sequence ? help Back to Top
Protein Sequence Length: 565 aa Download sequence
MQSNFDISEI GNQQHLMDIS NSCSPILPIF NHQKQNHHHH HFNQQPEQPE PYHISHLVHP 60 TPITHDLFQR QHLQALQQQG RLHWQLGPVN FKLGLNENSE NGESALLGAG LFDDEHGDDP 120 RLLQSRMHNL GFKSWQTHEP MCWKPLDAAI PETNRKQKEA NEGDICKDLE NKYRLYGELE 180 AIYSLAKMGE ANQTGSGSAL TGENSPKNVD LPVPFCDPHD LNVAPTAQVR VDDGSEASIG 240 EESSPRKIQK RKRKRTMKKQ LSSVISFFES LVTQVMDHQE NLHKKYLEVI ERTDKERRER 300 EAAWRNQEAE NHKREAIAKV HEQVLASSRE ALIVSYIEKI TGQRVNLPSR QAPLLLQPDN 360 LNEPPVEELT PFKIDHTNSR WPQSEVKALI LVRSGIESKF QEPGVKGPVW EEVSALMGSM 420 GYQRSAKRCK QKWENINKYF RKTKDSAKKR PHNFKTCSYF NQLDQLYSGT PITAPSSSSS 480 YYSSNPSASM DDNIPKQGFS DLLEAFVAGR EAGVAHDLPS GNFEISEMGS NRLDFDGIIG 540 GKLVIGARAI EIPSNLNDHL FYQNR

Sequence ? help Back to Top

Protein Sequence Length: 565 aa Download sequence

MQSNFDISEI GNQQHLMDIS NSCSPILPIF NHQKQNHHHH HFNQQPEQPE PYHISHLVHP  60
TPITHDLFQR QHLQALQQQG RLHWQLGPVN FKLGLNENSE NGESALLGAG LFDDEHGDDP  120
RLLQSRMHNL GFKSWQTHEP MCWKPLDAAI PETNRKQKEA NEGDICKDLE NKYRLYGELE  180
AIYSLAKMGE ANQTGSGSAL TGENSPKNVD LPVPFCDPHD LNVAPTAQVR VDDGSEASIG  240
EESSPRKIQK RKRKRTMKKQ LSSVISFFES LVTQVMDHQE NLHKKYLEVI ERTDKERRER  300
EAAWRNQEAE NHKREAIAKV HEQVLASSRE ALIVSYIEKI TGQRVNLPSR QAPLLLQPDN  360
LNEPPVEELT PFKIDHTNSR WPQSEVKALI LVRSGIESKF QEPGVKGPVW EEVSALMGSM  420
GYQRSAKRCK QKWENINKYF RKTKDSAKKR PHNFKTCSYF NQLDQLYSGT PITAPSSSSS  480
YYSSNPSASM DDNIPKQGFS DLLEAFVAGR EAGVAHDLPS GNFEISEMGS NRLDFDGIIG  540
GKLVIGARAI EIPSNLNDHL FYQNR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	246	260	RKIQKRKRKRTMKKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	8e-47	Trihelix family protein