PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1090890.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 492aa MW: 52053 Da PI: 8.9514

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1090890.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.4	0.00023	120	142	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ Pd.00g1090890.m01 120 WKCEKCSKRYAVQSDWKAHSKTC 142 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 492 aa Download sequence
MAASSSSVAP LFGIREEDQN QQMKQQHSST PPTSSTAAAA APPQKKKRNQ PGTPSKSRSR 60 SDSTISQDPN GNKQKTTKEP KRKVYLCPEP TCVHHDPSRA LGDLTGIKKH FSRKHGEKKW 120 KCEKCSKRYA VQSDWKAHSK TCGTREYRCD CGTLFSRRDS FITHRAFCDA LAQESARHPP 180 SLSTIGSSLY GGSLSNTGLG LSHQVVGPPQ ISSLQQDQCQ SGTAADILRL GGAGAAGAAR 240 TGQFDHLLGS SFRPAAQSSA SFFLTAPDQS TQQQYHDHDQ DNATNNNLLI SPDHFNTNVN 300 GTTTAAGGSE ATALLQKAAQ MGSTNSSNNT TASLLRSFGS SSSATAKSDR PGALVPSSLG 360 GMFGSDQHDQ SHLQDLMNSF ANTGGSSIFA NASFGGYDAA AANRAINMEE TKLQQQNSRG 420 VSNIGGADRL TRDFLGVGQV VRSMSGAISH QRSEHHSEQQ HGMDMSSLDS ESNAVAAAAP 480 SSQSFGGGGN FQ

Sequence ? help Back to Top

Protein Sequence Length: 492 aa Download sequence

MAASSSSVAP LFGIREEDQN QQMKQQHSST PPTSSTAAAA APPQKKKRNQ PGTPSKSRSR  60
SDSTISQDPN GNKQKTTKEP KRKVYLCPEP TCVHHDPSRA LGDLTGIKKH FSRKHGEKKW  120
KCEKCSKRYA VQSDWKAHSK TCGTREYRCD CGTLFSRRDS FITHRAFCDA LAQESARHPP  180
SLSTIGSSLY GGSLSNTGLG LSHQVVGPPQ ISSLQQDQCQ SGTAADILRL GGAGAAGAAR  240
TGQFDHLLGS SFRPAAQSSA SFFLTAPDQS TQQQYHDHDQ DNATNNNLLI SPDHFNTNVN  300
GTTTAAGGSE ATALLQKAAQ MGSTNSSNNT TASLLRSFGS SSSATAKSDR PGALVPSSLG  360
GMFGSDQHDQ SHLQDLMNSF ANTGGSSIFA NASFGGYDAA AANRAINMEE TKLQQQNSRG  420
VSNIGGADRL TRDFLGVGQV VRSMSGAISH QRSEHHSEQQ HGMDMSSLDS ESNAVAAAAP  480
SSQSFGGGGN FQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	45	75	KKKRNQPGTPSKSRSRSDSTISQDPNGNKQK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02070.1	2e-70	C2H2 family protein