PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1092560.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MYB

Protein Properties

Length: 386aa MW: 43717.6 Da PI: 6.2297

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1092560.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.2	6.9e-17	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ +++++G+g +W + ++++g++R++k+c++rw++yl Pd.00g1092560.m01 14 KGPWSPEEDARLKAYIEEHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	37.3	6.2e-12	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ + G++ W+ Ia+ ++ gRt++++k++w++ Pd.00g1092560.m01 69 GGFSEEEDNIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence
MGRAPCCDKA NVKKGPWSPE EDARLKAYIE EHGTGGNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNIKHGG FSEEEDNIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGR 120 CKQSNINRLP SGQSEDHLKD AEDAHALSSS ALERLQLHMQ LQSLQNPFSF YNTPALWPKL 180 HPLQEKMIQT LRSMNDQNCN NPLMHHHALS SPHQTVEGHK SNSDVYEQLQ PTSASIRIQE 240 EYALCNPKNM DELENALNGM SSSDAAYHAF ISTSNQVDST IVVTKAADGM EHSNDAGTHD 300 HQQINSSFQT EFGDILSNKS VAYKPQQEDD QITEFDCFEE MNGSKDSLVW WANEFYAKSA 360 SSNSWDSTSV LQSQGMFQDY ELRYNL

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence

MGRAPCCDKA NVKKGPWSPE EDARLKAYIE EHGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDNIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGR  120
CKQSNINRLP SGQSEDHLKD AEDAHALSSS ALERLQLHMQ LQSLQNPFSF YNTPALWPKL  180
HPLQEKMIQT LRSMNDQNCN NPLMHHHALS SPHQTVEGHK SNSDVYEQLQ PTSASIRIQE  240
EYALCNPKNM DELENALNGM SSSDAAYHAF ISTSNQVDST IVVTKAADGM EHSNDAGTHD  300
HQQINSSFQT EFGDILSNKS VAYKPQQEDD QITEFDCFEE MNGSKDSLVW WANEFYAKSA  360
SSNSWDSTSV LQSQGMFQDY ELRYNL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	1e-103	MYB family protein