PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1096320.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 201aa    MW: 21371.8 Da    PI: 7.3393
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1096320.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260114.57.1e-3648142194
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                        +C aCk+lrrkC ++C++ap+f ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ ++ yeA+ar+ dPvyG+v++il+lqqq + ++
  Pd.00g1096320.m01  48 PCGACKFLRRKCISGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLLHIPLNRRQDAVVTISYEAQARLADPVYGCVSTILALQQQPAYSN 139
                        7***********************9989***********************************************************98777 PP

             DUF260  92 ael 94 
                        +  
  Pd.00g1096320.m01 140 NSS 142
                        655 PP
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    
MADQPVQGDH CTSKSRRKGT SGGAGRPTSN TEAAATTNNT VVVGGAPPCG ACKFLRRKCI  60
SGCIFAPHFG SDQGAARFAA VHKVFGASNV SKLLLHIPLN RRQDAVVTIS YEAQARLADP  120
VYGCVSTILA LQQQPAYSNN SSASTNLINM CSFTSNFDLA AKTAPSSQSL DPLQLSRPSQ  180
DDEDDEEESQ VPLMFANDRY T
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.12e-60LBD family protein