PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1100280.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 395aa    MW: 43847.3 Da    PI: 6.7427
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1100280.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS436.32.3e-13393691374
               GRAS   1 lvelLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                        lv+lL++cAe v+ gdl+la +l++++++l  + ++   + ++a yf  AL++r+++         +ps +s     e+   +++f+e++P+
  Pd.00g1100280.m01   9 LVHLLVTCAESVQRGDLALAGSLIENMQTLltRVNTSCGIGKVAGYFIDALSRRIFS---------HPSVAS---AHENELLYHYFYEACPY 88 
                        68***************************954444446899***************9.........333333...456667889******** PP

               GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                        lkf+h+taNqaIlea++g+++vH+iDf++++GlQWpaL+qaLa Rp+gpp lR+Tg+g+p+++ +++l+e+g rLa++A++++v+f f+ ++
  Pd.00g1100280.m01  89 LKFAHFTANQAILEAFQGHDCVHVIDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNVRFAFRGVA 180
                        ******************************************************************************************** PP

               GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                        a+rled+++++L+v+p+Ea+aVn+++qlhrll ++ + +s+++ +L  +++l+Pk+v+vveqeadhn++ Fl+rf+eal+yys++fdslea 
  Pd.00g1100280.m01 181 ASRLEDVKPWMLQVSPKEAVAVNSIMQLHRLLGSDPNRNSPIEMMLGWIRNLNPKIVTVVEQEADHNKTGFLDRFTEALYYYSTMFDSLEAC 272
                        *****************************************************************************************999 PP

               GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366
                           + + ++ + +++++rei+nvv+cega+r+erhe l+kWr+rl++aGF+p++l+++a kqa++ll  ++ +gyrvee++g+l+lgW++rp
  Pd.00g1100280.m01 273 ---AMQPEKALAEMYIQREICNVVCCEGAARVERHEPLGKWRARLGQAGFRPLHLGSNAFKQASMLLTLFSAEGYRVEENDGCLTLGWHSRP 361
                        ...467777888899***************************************************************************** PP

               GRAS 367 LvsvSaWr 374
                        L+++SaW+
  Pd.00g1100280.m01 362 LIAASAWQ 369
                        *******6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    
MEEDSGIRLV HLLVTCAESV QRGDLALAGS LIENMQTLLT RVNTSCGIGK VAGYFIDALS  60
RRIFSHPSVA SAHENELLYH YFYEACPYLK FAHFTANQAI LEAFQGHDCV HVIDFNLMHG  120
LQWPALIQAL ALRPGGPPLL RLTGIGPPSP DGRDSLREIG LRLAELARSV NVRFAFRGVA  180
ASRLEDVKPW MLQVSPKEAV AVNSIMQLHR LLGSDPNRNS PIEMMLGWIR NLNPKIVTVV  240
EQEADHNKTG FLDRFTEALY YYSTMFDSLE ACAMQPEKAL AEMYIQREIC NVVCCEGAAR  300
VERHEPLGKW RARLGQAGFR PLHLGSNAFK QASMLLTLFS AEGYRVEEND GCLTLGWHSR  360
PLIAASAWQV MPTAEATTAN QPVGVINQNN NANHV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.11e-128GRAS family protein