PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1107180.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

ARF

Protein Properties

Length: 768aa MW: 85694.6 Da PI: 5.5122

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1107180.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	73.3	2.9e-23	115	223	1	98
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk.. 83 f k+ltpsd++++g +++pk+ a+e+ ++++ ++l+ +d++g +W +++i+r++++r++lt+GW+ Fv a++L +gD ++F Pd.00g1107180.m01 115 FNKTLTPSDTSTHGGFSVPKRQADEClppldmsQQPP--VQELIARDLQGFEWHFRHIFRGQPKRHLLTSGWSTFVTAKRLVAGDACTFLsn 204 89***************************744444..458*********************************************955 PP ....E-SS.SEE..EEEEE- CS B3 84 ....ldgr.sefelvvkvfr 98 r +++el+v+++r Pd.00g1107180.m01 205 dcnsC-FRgENGELRVGIRR 223 55432.23366667777776 PP
2	Auxin_resp	103.7	2.2e-34	249	331	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a ha st+++F+v+Y+P++s++ F++++++++k+ k+ +s+GmRf+m fe+++++e+rl+Gt+ +++d d +rWp S+Wr+Lk Pd.00g1107180.m01 249 AFHANSTGTMFTVYYRPWTSPAAFIIPYDQYMKSAKNDYSIGMRFRMCFEGDECAEKRLAGTILDIEDNDCIRWPSSEWRCLK 331 67999****************************************************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 768 aa Download sequence
MAPRTTTVNI AERESSGCSD GSAFPADAAA NKNKRGEKDD SYTRLWHACA GPNVYVPRPG 60 EKVFYFPQGH MEQAEVHTDE VFAQITLLPL TEQEQLSLDE ENNQPVPQST STRSFNKTLT 120 PSDTSTHGGF SVPKRQADEC LPPLDMSQQP PVQELIARDL QGFEWHFRHI FRGQPKRHLL 180 TSGWSTFVTA KRLVAGDACT FLSNDCNSCF RGENGELRVG IRRANKKQDN ASTALISGHS 240 MQHGILASAF HANSTGTMFT VYYRPWTSPA AFIIPYDQYM KSAKNDYSIG MRFRMCFEGD 300 ECAEKRLAGT ILDIEDNDCI RWPSSEWRCL KVQWDASSDT NLHPERLSPW NIMPLQPNKR 360 AHVPDLMSPG FPNLATNGLL PIPVEYTPPR QKKVFQGQEI SDPPAHEPGT QKPPLLPQFI 420 PPSNPDWNYT QLGLENNPLH DPLFQCPGSA IAPSLTNQWP PKFNFGVLDS VEFRRSMSVP 480 NIKSSGSQDS RAFKPRSEIE ASLVQPNSRG TTMLFGVNIV TSHPELPSPQ VVTSSELLSP 540 CSITPISQSS VSETIQISET SKSVSGVLSA KQCKNCCSVT NRSCIKVLKY GAPVGRSVDL 600 TRFDGYGELI SELDQMFDFK GSLIDGSSGW QVTYMDDEGD MMLIGDYLWH EFLSMVQKLY 660 IYAQVQDLVV PEHWLVPSKA LEESEWLRVT LHKWLDDEYC PEATNVEISK IAAQSYYKSL 720 LGKQTDLGEI LLKMAIELES ISYQESFHGA FSSANAAVNL IAQRIEQS

Sequence ? help Back to Top

Protein Sequence Length: 768 aa Download sequence

MAPRTTTVNI AERESSGCSD GSAFPADAAA NKNKRGEKDD SYTRLWHACA GPNVYVPRPG  60
EKVFYFPQGH MEQAEVHTDE VFAQITLLPL TEQEQLSLDE ENNQPVPQST STRSFNKTLT  120
PSDTSTHGGF SVPKRQADEC LPPLDMSQQP PVQELIARDL QGFEWHFRHI FRGQPKRHLL  180
TSGWSTFVTA KRLVAGDACT FLSNDCNSCF RGENGELRVG IRRANKKQDN ASTALISGHS  240
MQHGILASAF HANSTGTMFT VYYRPWTSPA AFIIPYDQYM KSAKNDYSIG MRFRMCFEGD  300
ECAEKRLAGT ILDIEDNDCI RWPSSEWRCL KVQWDASSDT NLHPERLSPW NIMPLQPNKR  360
AHVPDLMSPG FPNLATNGLL PIPVEYTPPR QKKVFQGQEI SDPPAHEPGT QKPPLLPQFI  420
PPSNPDWNYT QLGLENNPLH DPLFQCPGSA IAPSLTNQWP PKFNFGVLDS VEFRRSMSVP  480
NIKSSGSQDS RAFKPRSEIE ASLVQPNSRG TTMLFGVNIV TSHPELPSPQ VVTSSELLSP  540
CSITPISQSS VSETIQISET SKSVSGVLSA KQCKNCCSVT NRSCIKVLKY GAPVGRSVDL  600
TRFDGYGELI SELDQMFDFK GSLIDGSSGW QVTYMDDEGD MMLIGDYLWH EFLSMVQKLY  660
IYAQVQDLVV PEHWLVPSKA LEESEWLRVT LHKWLDDEYC PEATNVEISK IAAQSYYKSL  720
LGKQTDLGEI LLKMAIELES ISYQESFHGA FSSANAAVNL IAQRIEQS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59750.2	1e-144	ARF family protein