PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1115280.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family LSD
Protein Properties Length: 124aa    MW: 13383.3 Da    PI: 7.6625
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1115280.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD137.34.5e-123559125
            zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                       Cg+Cr lL Y rGA++V+C++C+tV
  Pd.00g1115280.m01 35 CGSCRRLLKYSRGARHVQCSCCQTV 59
                       ************************9 PP
2zf-LSD141.13e-137397125
            zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                       Cg+C +lL+Y +GA+sVRC++C++V
  Pd.00g1115280.m01 73 CGSCAVLLMYQYGASSVRCSSCQFV 97
                       ***********************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    
MESTVEVDKG PVPEHQSIAA AQPPPSPSEI AQMVCGSCRR LLKYSRGARH VQCSCCQTVN  60
FVLEADQVGQ VKCGSCAVLL MYQYGASSVR CSSCQFVTEI GEHNKRPPWS VQQGQPPAPA  120
NPVH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.17e-42LSD family protein