PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1116440.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 253aa    MW: 28640.1 Da    PI: 6.7189
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1116440.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.21.4e-111466148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqkyl 48
                       +g+W+++Ed +l+ +++++G  +W+  ++        + R++k+c++rw +yl
  Pd.00g1116440.m01 14 KGPWSPDEDHKLIAYIQRYGIWNWSQMPKPAVchvsgLARSGKSCRLRWVNYL 66
                       79******************99****9999989999***************97 PP
2Myb_DNA-binding54.82.1e-1772117148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rg++++eE+e ++++++ +G++ W++Ia+t++ gRt++++k++w+++l
  Pd.00g1116440.m01  72 RGSFSKEEEEAILKLHETMGNR-WSAIAATLP-GRTDNEIKNFWHTHL 117
                        899*******************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    
MVKSQQCEKA AVKKGPWSPD EDHKLIAYIQ RYGIWNWSQM PKPAVCHVSG LARSGKSCRL  60
RWVNYLRPDI KRGSFSKEEE EAILKLHETM GNRWSAIAAT LPGRTDNEIK NFWHTHLKKR  120
FKATEPVQEA QVFNDKKKFS ETELFLLGEA PKASKLETTS TSSGPVHGDH NKDQIAEQNI  180
CASETFGELQ SLWAESHIVR DSEAIFTDPG FTLSNPPTQS WLQEPIFPSG SSYNDASNDY  240
WVNLSMQAEI DGI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.11e-55MYB family protein