PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1117750.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 189aa    MW: 20966.6 Da    PI: 6.6182
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1117750.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26099.53.3e-3181091101
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                        +C aCk+l+++C+++C++apyf +e+   +f  +h +FGas+++++l+ lp +er  a  ++++eA+ara dP yG+v+ il+lq+q+ + +
  Pd.00g1117750.m01   8 PCGACKFLKQRCKRGCIFAPYFMHEEaITDFSSIHNVFGASKMSRILSMLPMSERAVASWTMTFEAHARAVDPTYGCVSYILDLQEQVLNIQ 99 
                        7*********************999856**************************************************************** PP

             DUF260  92 aelallkeel 101
                        a+l++++e+l
  Pd.00g1117750.m01 100 AQLDEAHEQL 109
                        *****99985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    
MSSRTFNPCG ACKFLKQRCK RGCIFAPYFM HEEAITDFSS IHNVFGASKM SRILSMLPMS  60
ERAVASWTMT FEAHARAVDP TYGCVSYILD LQEQVLNIQA QLDEAHEQLA RAVVPVANPT  120
EQSAVANPTE FESLPQFSFT HTNNVDNKNM NLNYHDDPST SAGKGSNLTE TPSSFLVGEG  180
ARIWAKSKH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42440.16e-44LBD family protein