PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1124000.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

GRF

Protein Properties

Length: 413aa MW: 44523.1 Da PI: 10.094

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1124000.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	71	1.4e-22	109	154	1	46
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskees 46 d epgrCrRtDGKkWRC ++v++++k+C+ H+hrgr+rsrk++e+s Pd.00g1124000.m01 109 DHEPGRCRRTDGKKWRCNKNVVPDQKYCQQHMHRGRQRSRKPVENS 154 679***************************************9985 PP
2	WRC	64.1	2.1e-20	321	362	2	43
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrksk 43 epgrCrRtDGKkWRC+r+vl+ +k+C H+hrg +r+ k + Pd.00g1124000.m01 321 LEPGRCRRTDGKKWRCRRDVLPHQKYCGQHIHRGAKRQMKDF 362 59************************************9976 PP
3	QLQ	55.7	1.5e-19	42	76	3	37
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +Ta+Ql++L++Q+l+yK++aan+PvP +L+++++k Pd.00g1124000.m01 42 LTATQLHELEQQALIYKHFAANLPVPFHLVLPVWK 76 7********************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence
MEEEGGGKVK LGLGIGVDCY GDDHNGTEEV VGKKKKYGGG GLTATQLHEL EQQALIYKHF 60 AANLPVPFHL VLPVWKSVAA SFGSSNAAAI NRQYPSFVGF SATGFDYRDH EPGRCRRTDG 120 KKWRCNKNVV PDQKYCQQHM HRGRQRSRKP VENSEVASPS STRTPKNSEG ELGNSKTNLQ 180 ISTPKGLQLM AQSYNYVSVS QGTTMASSGY HECKKNIRPV TTTSIANIPA NRSASTNPAA 240 VATTTIAGPT TATNSSTNEN SLNIGVKYNS SNHAGGNCMI RGSSMNVVNV SPGLGFSPKS 300 VLQALLGCNG LYFDNGSGVE LEPGRCRRTD GKKWRCRRDV LPHQKYCGQH IHRGAKRQMK 360 DFQPVAVPSS SAAAMNTARL SQTTAICRKT NCAIPNTNLS ISIPANPPPG RND

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence

MEEEGGGKVK LGLGIGVDCY GDDHNGTEEV VGKKKKYGGG GLTATQLHEL EQQALIYKHF  60
AANLPVPFHL VLPVWKSVAA SFGSSNAAAI NRQYPSFVGF SATGFDYRDH EPGRCRRTDG  120
KKWRCNKNVV PDQKYCQQHM HRGRQRSRKP VENSEVASPS STRTPKNSEG ELGNSKTNLQ  180
ISTPKGLQLM AQSYNYVSVS QGTTMASSGY HECKKNIRPV TTTSIANIPA NRSASTNPAA  240
VATTTIAGPT TATNSSTNEN SLNIGVKYNS SNHAGGNCMI RGSSMNVVNV SPGLGFSPKS  300
VLQALLGCNG LYFDNGSGVE LEPGRCRRTD GKKWRCRRDV LPHQKYCGQH IHRGAKRQMK  360
DFQPVAVPSS SAAAMNTARL SQTTAICRKT NCAIPNTNLS ISIPANPPPG RND

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	1e-30	GRF family protein