PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1124580.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family ARR-B
Protein Properties Length: 601aa    MW: 67877.2 Da    PI: 6.1541
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1124580.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like27.95.2e-09206242138
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkv 38 
                        kp+l+Wt+eLH+rF+ av+ L G +   P  i  +m+ 
  Pd.00g1124580.m01 206 KPKLVWTNELHKRFLLAVRLL-GVDSKSPLDIGSVMNF 242
                        79*******************.99999********996 PP
2Myb_DNA-binding32.22.5e-10208289148
                        TSSS-HHHHHHHHHHHHHTTTT.................................-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.................................tWktIartmg.kgRtlkqcksrwqkyl 48 
                        ++ WT e++++++ av++lG +                                 ++k+I ++m+  g+  +++ s++qky+
  Pd.00g1124580.m01 208 KLVWTNELHKRFLLAVRLLGVDskspldigsvmnfftllgaietkianlfldlgaHPKKILQHMNvPGLRKENVSSHLQKYR 289
                        679******************************************************************************7 PP
3G2-like377.4e-122622902755
            G2-like  27 AtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        A Pk+il++m+v+gL  e+v SHLQkYRl
  Pd.00g1124580.m01 262 AHPKKILQHMNVPGLRKENVSSHLQKYRL 290
                        78**************************8 PP
4Response_reg52.23.5e-18241311108
                        EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHH CS
       Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedaleal 90 
                        vl+vd + + + +l ++l + gy +v +a+ + +al ++++k+   +l+l+   +p+md +ell+++++ + k+p++++++ ++e+ +l  l
  Pd.00g1124580.m01  24 VLVVDGDSACLAILSRMLCNLGY-KVMTAKRAYDALSIAQKKEdeLHLVLTEAHLPDMDKYELLEKMKAVS-KVPVVIMSDDDDENAMLGGL 113
                        89*********************.***************888889***********************999.******************** PP

                        HTTESEEEESS--HHHHH CS
       Response_reg  91 kaGakdflsKpfdpeelv 108
                          Ga  +++Kp  ++ l 
  Pd.00g1124580.m01 114 FKGAVFYFVKPLTINSLK 131
                        ************999886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    
MSDEKAISVE SVNSSSPRLE SVSVLVVDGD SACLAILSRM LCNLGYKVMT AKRAYDALSI  60
AQKKEDELHL VLTEAHLPDM DKYELLEKMK AVSKVPVVIM SDDDDENAML GGLFKGAVFY  120
FVKPLTINSL KNLWQFAFIK NRNHVVIDLT EEETSVYAES QKENTSNEGL ESESFMTRDR  180
WLKRKNPEGT YKDEETENSD STSQKKPKLV WTNELHKRFL LAVRLLGVDS KSPLDIGSVM  240
NFFTLLGAIE TKIANLFLDL GAHPKKILQH MNVPGLRKEN VSSHLQKYRL SLKREQEAIM  300
KARARGPKKS NFPSHQSLST LNFRGGCSHT PNWYSTSTAY QPKRRSHVQD LSSHMSRPSP  360
TGSVCFPNQV YSSGHPTLNE SSFPSMPYHS NYKNGQPTLN NQLDYTNYHN TNHIGNRITS  420
NKELAGFRQV GSFVRYSNFD GNENFSTFGD HGHSNLEDFP IFLHNSTQQE EQQQKQLQPQ  480
VLFSPPLQMP SPLLQPQEQQ ENDILGQERQ LQPQFLPSPP LQMPSPSPLP AAAEQQGEQD  540
DIFGLEKQLM QSPQWHMPSM PSMPAAPTAH EQEQDDMFGI ESEETDALFD IAKGTTQHFN  600
D
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1343347KRRSH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.13e-51ARR-B family protein