PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g113200.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MIKC_MADS

Protein Properties

Length: 143aa MW: 16042.3 Da PI: 10.2431

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g113200.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	61.3	1.1e-19	9	42	1	34
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-E CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdae 34 krien+snrqvt+skRrngi+KKA+E+ vLCda+ Pd.00g113200.m01 9 KRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAK 42 79******************************96 PP
2	K-box	49.4	2e-17	40	94	13	67
K-box 13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRs 67 +a++l++e++++kk ++++q e+Rhl+ ed++sL++keL+ Le++Le++l + R+ Pd.00g113200.m01 40 DAKNLSNEVDRVKKDNDSMQVELRHLKAEDITSLTHKELMALENALENGLASGRA 94 4589**********************************************98765 PP

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence
MGRGKIEIKR IENSSNRQVT YSKRRNGIIK KAKEITVLCD AKNLSNEVDR VKKDNDSMQV 60 ELRHLKAEDI TSLTHKELMA LENALENGLA SGRALEEEHK RLTYELIGLF RLSVSSSLRR 120 GSQGNAILGF SLCAQTALDK SSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G20240.1	7e-39	MIKC_MADS family protein