PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1132130.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 230aa    MW: 25606.9 Da    PI: 9.1358
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1132130.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.55.3e-0998122327
                        S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                        +++C f+++ G+Ck+G+ CkF+H++
  Pd.00g1132130.m01  98 EPPCAFHLKKGQCKFGAICKFHHSK 122
                        79*********************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    
MCPVSRLQLL HQHINLGFRV ERSLRIRRRT ISCCCCSRHS RHLQRLPLTC PNRLLPIRPD  60
PPSSWLAPDV EPGVKRPSED VYWKFLILIS KLPERPSEPP CAFHLKKGQC KFGAICKFHH  120
SKDILIPSAE QENTIGETGT TIQPEGTEFA VKPLVSFSPA LSFNSKELPV RPGEPDCPFY  180
LIGSCNLDPK AVQCLPIFGE RPGVIKGSDH IMSPGTKLGP PHGASRKVPT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-27C3H family protein