PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1136090.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family ARF
Protein Properties Length: 845aa    MW: 94149.9 Da    PI: 6.8877
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1136090.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.51e-22160261199
                        EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                        f+k+lt sd++++g +++ +++a+e+      + + + +++l+ +d++ ++W++++i+r++++r++l++GW+ Fv++++L +gD ++F   +
  Pd.00g1136090.m01 160 FCKTLTASDTSTHGGFSVLRRHADEClppldmSRQ-PPTQELVAKDLHANEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--R 248
                        99*****************************7333.34459************************************************..4 PP

                        SSEE..EEEEE-S CS
                 B3  87 rsefelvvkvfrk 99 
                         +++el+v+v+r+
  Pd.00g1136090.m01 249 GENGELRVGVRRA 261
                        49999*****996 PP
2Auxin_resp114.87.7e-38286368183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        a+ha+ t+++F+v+Y+Pr+s++eF+v+++++++++k+++s+GmRfkm+fe+e+++e+r++Gt++g++d+d+ rW++SkWrsLk
  Pd.00g1136090.m01 286 AWHAILTGTMFTVYYKPRTSPAEFIVPFDQYMESVKNNYSIGMRFKMRFEGEEAPEQRFTGTIIGIEDADTKRWRDSKWRSLK 368
                        79*******************************************************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 845 aa     Download sequence    
MTSSEVSIKD NCGNQRGDSF SSSFSDHNDA RNNLEGQNSH PTVSAAGRDA ETALYTELWH  60
ACAGPLVTVP RERERVFYFP QGHIEQVEAS TNQVADQQMP VYNLPSKILC RVIHVQLKAE  120
PDTDEVFAQV TLLPEPSQDE NAVEKEPPPP PPPRFQVHSF CKTLTASDTS THGGFSVLRR  180
HADECLPPLD MSRQPPTQEL VAKDLHANEW RFRHIFRGQP RRHLLQSGWS VFVSSKRLVA  240
GDAFIFLRGE NGELRVGVRR AMRQQGSAPS SVISSHSMHL GVLATAWHAI LTGTMFTVYY  300
KPRTSPAEFI VPFDQYMESV KNNYSIGMRF KMRFEGEEAP EQRFTGTIIG IEDADTKRWR  360
DSKWRSLKVR WDETSTIPRP DRVSPWKIEP ALAPPALNPL PMPRPKRPRS NMVPSSPESI  420
LTREGSSKVT ADPAMPGGFS RVLQGQEFST LRGNFVDSES DTAEKSLAWT PSVDDEKIDV  480
VSASRRYGSE NWMPSGRHEP TYTDLLSGFG TNVDSSRGIC PPFVDQAVGN SMRKHSLDQE  540
GKFNLQSWSM LPSSLSLSLD SNLKGPPIGN MAYQAQGNAR YGGYSDCSVL NGHRVDHPQG  600
NWLMPPPPSH LENPANAREA MPQHASLQKQ EAVKPKDVNY RLFGIPLIAP EAALSHRNAM  660
IGSPHHNQVH TFESDQKSDK SRGTKSVENP LAVSEPDKLL QTSQQHVRDG QGKPQGGSTR  720
SCTKVHKQGI ALGRSVDLTK FNNYEELIAA LDQLFEFDGE LMAPKKNWLI VYTDDEGDMM  780
LVGDDPWQEF CGIVRKIFIY TREEVQKMNP GTLNSHGEEN LSLVAEGLGL KICRVLGGRL  840
VTVHL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0ARF family protein