PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g113730.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 1006aa MW: 109146 Da PI: 8.9046

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g113730.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.6	7.6e-12	4	27	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k+e+C++f+r G C++GdrCkF H+ Pd.00g113730.m01 4 KREPCKYFQR-GSCQFGDRCKFLHV 27 89******.***********6 PP

Sequence ? help Back to Top
Protein Sequence Length: 1006 aa Download sequence
MPVKREPCKY FQRGSCQFGD RCKFLHVIQQ QQKSNIFGFG PQSGSDQQRK SNPYGFGVQN 60 NSQSKGPADF GSKQSQFKPF ENKWSRFSSQ TASAAPSSQK SDKQPQATNH RCTDPDSCRS 120 IIIEDNEHES PLWKLTCYGH WKNFPCDIVG DISYEELRAA AYDDAKHGLN MQSIIERERN 180 LLNTKLIEFD KLCKPQGALL KPNHSSQNPF PSASQNAFLQ AANNSAAPSL SSFSQLGTSL 240 NTGFGPRPSA PSNNGFAQLN PFANSTQTSS GFGTNNFLSG SAGFGNTGVM RHETNPFSTL 300 AVSSQIPSAT TGLPPILSDG PTSASNAVRQ STTEVQFLTN MQREKISGET SIWLKKIWSP 360 GEIPEEEPPD ALVEFQSLEM LRKEGLPPIV RPNIPIIFCN ICKGFCIYLM LYTVPVKSAT 420 TSSTSSGEGS LGVVKVDPTL NFENPRLRQA YIALQAWKAA IFSDPFNFTS SWNGSDVCSY 480 MGVFCAPMST GAHGRVVAGI DLNHADIAGY LPPELGLLSD LALFHLNSNR FCGVVPSSLR 540 RMKLLHELDL SNNRFVGDFP KVVFSLPSLK YLDLRFNEFE GSVPSQLFDK DLDALFLNDN 600 RFQFGIPPNL GNSPVSVLVL ANNNLGGCIP GSIGNMAKTL NEIILLNDNL TGCLPPQIGL 660 LTNLTVFDVS FNRLQGPLPS TIGKNMKSLE ELDVARNRLT GVIPASICQL PRLHNFTYSF 720 NYFTGEAPAC AANKNNINGR KNCIRGKLDQ RSARECASPA ARPVDCRKLQ CSSTTSPGGG 780 GGSGGGSKRR PPPPSAPVGN KPPAQRRPPR VSTPPPPTSE SSPSTRSHPP PPSNPSSSSS 840 SPPLVPNRAP PPSNSNSHSH SPTKPPPPTQ RVSPRTHLPP SPPPSRGHHH WTLTPPPPPT 900 QNVSPTTHLR PPPPPLPTHY NSSSSPPPPV LYHASPPDHS KHDLVSPSPP NQYSHHHSPP 960 EQQHWHQPPP SSHQQFPPPS PFDSTPLPPV IGVSYASPPP PVVPYY

Sequence ? help Back to Top

Protein Sequence Length: 1006 aa Download sequence

MPVKREPCKY FQRGSCQFGD RCKFLHVIQQ QQKSNIFGFG PQSGSDQQRK SNPYGFGVQN  60
NSQSKGPADF GSKQSQFKPF ENKWSRFSSQ TASAAPSSQK SDKQPQATNH RCTDPDSCRS  120
IIIEDNEHES PLWKLTCYGH WKNFPCDIVG DISYEELRAA AYDDAKHGLN MQSIIERERN  180
LLNTKLIEFD KLCKPQGALL KPNHSSQNPF PSASQNAFLQ AANNSAAPSL SSFSQLGTSL  240
NTGFGPRPSA PSNNGFAQLN PFANSTQTSS GFGTNNFLSG SAGFGNTGVM RHETNPFSTL  300
AVSSQIPSAT TGLPPILSDG PTSASNAVRQ STTEVQFLTN MQREKISGET SIWLKKIWSP  360
GEIPEEEPPD ALVEFQSLEM LRKEGLPPIV RPNIPIIFCN ICKGFCIYLM LYTVPVKSAT  420
TSSTSSGEGS LGVVKVDPTL NFENPRLRQA YIALQAWKAA IFSDPFNFTS SWNGSDVCSY  480
MGVFCAPMST GAHGRVVAGI DLNHADIAGY LPPELGLLSD LALFHLNSNR FCGVVPSSLR  540
RMKLLHELDL SNNRFVGDFP KVVFSLPSLK YLDLRFNEFE GSVPSQLFDK DLDALFLNDN  600
RFQFGIPPNL GNSPVSVLVL ANNNLGGCIP GSIGNMAKTL NEIILLNDNL TGCLPPQIGL  660
LTNLTVFDVS FNRLQGPLPS TIGKNMKSLE ELDVARNRLT GVIPASICQL PRLHNFTYSF  720
NYFTGEAPAC AANKNNINGR KNCIRGKLDQ RSARECASPA ARPVDCRKLQ CSSTTSPGGG  780
GGSGGGSKRR PPPPSAPVGN KPPAQRRPPR VSTPPPPTSE SSPSTRSHPP PPSNPSSSSS  840
SPPLVPNRAP PPSNSNSHSH SPTKPPPPTQ RVSPRTHLPP SPPPSRGHHH WTLTPPPPPT  900
QNVSPTTHLR PPPPPLPTHY NSSSSPPPPV LYHASPPDHS KHDLVSPSPP NQYSHHHSPP  960
EQQHWHQPPP SSHQQFPPPS PFDSTPLPPV IGVSYASPPP PVVPYY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75340.2	9e-57	C3H family protein