PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1138740.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

M-type_MADS

Protein Properties

Length: 406aa MW: 46535.3 Da PI: 5.0709

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1138740.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	22.4	1.6e-07	10	49	6	45
HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 k +r+v+fskRr g++ K + + +ae+ ++++s+ g+ Pd.00g1138740.m01 10 KNRRYVSFSKRRSGLFSKGKVFCKKFEAEIGIVVLSEAGR 49 679***************999999********9996 PP

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence
MEQKEAKLYK NRRYVSFSKR RSGLFSKGKV FCKKFEAEIG IVVLSEAGRP YWAPDNPSLD 60 AVLDRFMQSD QAPTNAIDFK VRRQKKRKKE EQDNEVQGQL AEEVKSCRTV KDMFSLRDKY 120 LVLLQDYSNK RMKGSHVLGK GKAKCVSTTP SNLSFEDSVW VEPTSRHKDI CSSSTLKLDS 180 EHDHRLGNNN GVRGGHGWFW DEILKDGYTQ GVLMEPISKS EDVLYDSTLN FESDRNVFDT 240 HHGNINGGEG SSWCKDWEDG KAQCALMQPI LKSEEVLHNS TQNLESNRNV FTDQHGNNND 300 DDGTFWDRIL EYDKTHQLAS SEDVLFNSTP NFECDRLNNK NDGGDNNISL WDKILEESKS 360 ECVSFQPISE SEDFLYNPCL NFESDNRGFD HYQGDNNGGG ELWNYY

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence

MEQKEAKLYK NRRYVSFSKR RSGLFSKGKV FCKKFEAEIG IVVLSEAGRP YWAPDNPSLD  60
AVLDRFMQSD QAPTNAIDFK VRRQKKRKKE EQDNEVQGQL AEEVKSCRTV KDMFSLRDKY  120
LVLLQDYSNK RMKGSHVLGK GKAKCVSTTP SNLSFEDSVW VEPTSRHKDI CSSSTLKLDS  180
EHDHRLGNNN GVRGGHGWFW DEILKDGYTQ GVLMEPISKS EDVLYDSTLN FESDRNVFDT  240
HHGNINGGEG SSWCKDWEDG KAQCALMQPI LKSEEVLHNS TQNLESNRNV FTDQHGNNND  300
DDGTFWDRIL EYDKTHQLAS SEDVLFNSTP NFECDRLNNK NDGGDNNISL WDKILEESKS  360
ECVSFQPISE SEDFLYNPCL NFESDNRGFD HYQGDNNGGG ELWNYY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	82	88	RRQKKRK
2	82	90	RRQKKRKKE
3	85	89	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34440.1	6e-11	M-type_MADS family protein