PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1139620.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 216aa    MW: 24199.6 Da    PI: 8.4822
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1139620.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS210.21.2e-642216161374
               GRAS 161 tgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnses 252
                        ++++L+k+A++ gv +efn+ v+++l++l+ e+L ++p+E +aVn++++l++++desvs++++rde+L+ vk+lsP+vv+vveqe+++n+++
  Pd.00g1139620.m01   2 VRQNLSKVAKQHGVVLEFNI-VSQKLAELNRESLGCEPDEPIAVNFAFKLYSMPDESVSTDNPRDELLRRVKGLSPRVVTVVEQELNTNTAP 92 
                        689****************9.8********************************************************************** PP

               GRAS 253 FlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkv 344
                        F++r+ e++ yy al++s++++ + +++er+k E++ l+r++ n vaceg++r+er+e ++kWr+r+++aGF+  p+s+++++  k  l+  
  Pd.00g1139620.m01  93 FMARVKETCGYYGALLESMKSTEAGDNSERVKAEEA-LSRKLINSVACEGRDRVERCEVFGKWRARMGMAGFELRPMSQNMTEVLKQRLSSG 183
                        *******************9888999**********.*******************************************999998888654 PP

               GRAS 345 k...sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                        +   + g++v+ee+g +++gW +r+L+++SaWr
  Pd.00g1139620.m01 184 NnrvNSGFTVKEENGGVCFGWISRTLTVASAWR 216
                        4235789*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    
MVRQNLSKVA KQHGVVLEFN IVSQKLAELN RESLGCEPDE PIAVNFAFKL YSMPDESVST  60
DNPRDELLRR VKGLSPRVVT VVEQELNTNT APFMARVKET CGYYGALLES MKSTEAGDNS  120
ERVKAEEALS RKLINSVACE GRDRVERCEV FGKWRARMGM AGFELRPMSQ NMTEVLKQRL  180
SSGNNRVNSG FTVKEENGGV CFGWISRTLT VASAWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.13e-99GRAS family protein