PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1144950.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 148aa    MW: 16667.8 Da    PI: 4.7786
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1144950.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.87.6e-081161227
                       TS--TTTTT-SS-SSS CS
            zf-CCCH 12 tGtCkyGdrCkFaHgp 27
                       +G+Ck+G++CkF+H++
  Pd.00g1144950.m01  1 MGQCKFGATCKFHHPK 16
                       59************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    
MGQCKFGATC KFHHPKDILI PSAEQENTFG ETGTTIQPEG TGFAVKPPVS FNPALSFNSK  60
ELLVRPGEPD CAFYLIGSCK AFMRSDNQLE LKFIEKILSA VWTPNQTNAS LYLEKDQESL  120
RDPTTSCHQE PSWDLLMEHQ DRSQLDSW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.13e-20C3H family protein