PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1152580.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 264aa    MW: 28862.2 Da    PI: 8.2835
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1152580.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26096.62.6e-301693177
             DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGav 77
                       aCaaC+++r+kC +dCv+apyf ae+ ++f++vhk+FG+sn +kllk+l++++ r +a++s ++eA+ + +dPv+G +
  Pd.00g1152580.m01 16 ACAACRHQRKKCDDDCVMAPYFTAEKDEAFRAVHKIFGVSNTSKLLKKLEDKNhRGRAAESFIWEACTWKQDPVNGPL 93
                       7************************************************66655**********************86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    
MSMGSGNGGE LNSRHACAAC RHQRKKCDDD CVMAPYFTAE KDEAFRAVHK IFGVSNTSKL  60
LKKLEDKNHR GRAAESFIWE ACTWKQDPVN GPLVEQESIA LDQGSNNGSD MTYGYANQNL  120
APANGTYSSL LQGQEVTERK GLVDNNCVTG SNYQPAAISQ GGQQALERGR QETQRVIGFG  180
PPLMPFDPTI QGGNGRPMRF QGQGRGIAGL DCATNSPIWP NIYGQIRGHV AFDPSQRQFG  240
QVGAAQIGPK FNVEHFNQVK SERR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.12e-23LBD family protein