PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1152730.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

ARF

Protein Properties

Length: 1131aa MW: 127034 Da PI: 8.4958

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1152730.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	76.4	3.1e-24	85	186	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F + Pd.00g1152730.m01 85 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyN-QQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLISGDAVLFL--R 173 99**************************963.3445679********************************************..3 PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 +++el+++++r+ Pd.00g1152730.m01 174 GDDGELRLGIRRA 186 489999**996 PP
2	Auxin_resp	117.7	1e-38	211	292	1	82
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +++a+s+k++F+++YnPras+seF+++ +k+++ l++++s+GmRfkm+feted++err++G+++g+s+ldpvrWp+SkWr+L Pd.00g1152730.m01 211 VVNAISMKNAFNIFYNPRASSSEFIIPSRKFLRCLDHSFSPGMRFKMRFETEDAAERRYTGLITGISELDPVRWPGSKWRCL 292 6899*****************************************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 1131 aa Download sequence
MASKVGHLEQ VSDFPASAYD LPPHLFCRVV DVKLHAETGT DDVYAQVSLV PESEEIEHKL 60 REGETDAYGE EDVEAIGKST TPHMFCKTLT ASDTSTHGGF SVPRRAAEDC FPPLDYNQQR 120 PSQELVAKDL HGLEWRFRHI YRGQPRRHLL TTGWSAFVNK KKLISGDAVL FLRGDDGELR 180 LGIRRAAQVK GCATYPTLCS QQLNYNTITD VVNAISMKNA FNIFYNPRAS SSEFIIPSRK 240 FLRCLDHSFS PGMRFKMRFE TEDAAERRYT GLITGISELD PVRWPGSKWR CLVVRWDDID 300 TSKHGRVSPW EIEPSGSVSS SHSLMAAGLK RARSGLSAAK TEFPVPNGIG ASDFGESLRF 360 QKVLQGQEIL GFDTHFSGLG GQNQHPSEPR RGFHGSSGSG IAAGGNGLRK SLADSEITST 420 GIGFGESFRF HKVLQGQEIF PSPPYGRAST NNEAHEYGGP GIYDGFQVPS FRNGWSAMMQ 480 SNNAHVHPSA SSVQVSSPSS VLMFQQAMNP GPEFNSVYNG HNQEEQRVIK RTPYVSESDG 540 GKQASSSFCE RSFSREDHGG MNSYNQRSIS NHPVISQSTF SGSQDAVSPY KGSCRLFGFS 600 LSEEKRVPDR ESNSTSTAST LNPGVQFHSK PALMTSAVGI TCTKEWAFDW LTRNVTIMSI 660 IMLYEETANT LEATPTWAVA TVVFVLIAIS IIIEYLLHLL HKYFHRLKRK SLIQALDKIK 720 SELMLLGFIS LLLTVGQKPI ANICIPKSVG ESFLPCKSST FGHAVEETKC SDQGKVSLMS 780 REGAYELQYL IFVLAMFHVS SCVLTFALGM AKMKRWESWE AETRTLEYQF SYDPRRFQLT 840 YQTSFGKRHL KCWSDNRLLR WPAHFAEGSH FNFQKYIRRN LEKDFGVVMG ISWWIWLFSV 900 FVIFFNAHGF YNYLWVPFIP LVMLLLVGTK LQGIITKMCL DSHDKSHVVR GTLLVKPSNH 960 FFWFNWPQLL LHLLHFILFQ NSFQLAFFTW TWYKFGLRSC FHHETEDIVI RLGMGVIVQI 1020 LCGYVTLPLY ALVTQMGTSM RKAVFTENVV KGLKKWRAKA RKNLALRNHP HSARLSLDAS 1080 LETSLSLGTS PSLSGHDASF STVDFDRPSD DAEYVALEIR EAQKAQGETS T

Sequence ? help Back to Top

Protein Sequence Length: 1131 aa Download sequence

MASKVGHLEQ VSDFPASAYD LPPHLFCRVV DVKLHAETGT DDVYAQVSLV PESEEIEHKL  60
REGETDAYGE EDVEAIGKST TPHMFCKTLT ASDTSTHGGF SVPRRAAEDC FPPLDYNQQR  120
PSQELVAKDL HGLEWRFRHI YRGQPRRHLL TTGWSAFVNK KKLISGDAVL FLRGDDGELR  180
LGIRRAAQVK GCATYPTLCS QQLNYNTITD VVNAISMKNA FNIFYNPRAS SSEFIIPSRK  240
FLRCLDHSFS PGMRFKMRFE TEDAAERRYT GLITGISELD PVRWPGSKWR CLVVRWDDID  300
TSKHGRVSPW EIEPSGSVSS SHSLMAAGLK RARSGLSAAK TEFPVPNGIG ASDFGESLRF  360
QKVLQGQEIL GFDTHFSGLG GQNQHPSEPR RGFHGSSGSG IAAGGNGLRK SLADSEITST  420
GIGFGESFRF HKVLQGQEIF PSPPYGRAST NNEAHEYGGP GIYDGFQVPS FRNGWSAMMQ  480
SNNAHVHPSA SSVQVSSPSS VLMFQQAMNP GPEFNSVYNG HNQEEQRVIK RTPYVSESDG  540
GKQASSSFCE RSFSREDHGG MNSYNQRSIS NHPVISQSTF SGSQDAVSPY KGSCRLFGFS  600
LSEEKRVPDR ESNSTSTAST LNPGVQFHSK PALMTSAVGI TCTKEWAFDW LTRNVTIMSI  660
IMLYEETANT LEATPTWAVA TVVFVLIAIS IIIEYLLHLL HKYFHRLKRK SLIQALDKIK  720
SELMLLGFIS LLLTVGQKPI ANICIPKSVG ESFLPCKSST FGHAVEETKC SDQGKVSLMS  780
REGAYELQYL IFVLAMFHVS SCVLTFALGM AKMKRWESWE AETRTLEYQF SYDPRRFQLT  840
YQTSFGKRHL KCWSDNRLLR WPAHFAEGSH FNFQKYIRRN LEKDFGVVMG ISWWIWLFSV  900
FVIFFNAHGF YNYLWVPFIP LVMLLLVGTK LQGIITKMCL DSHDKSHVVR GTLLVKPSNH  960
FFWFNWPQLL LHLLHFILFQ NSFQLAFFTW TWYKFGLRSC FHHETEDIVI RLGMGVIVQI  1020
LCGYVTLPLY ALVTQMGTSM RKAVFTENVV KGLKKWRAKA RKNLALRNHP HSARLSLDAS  1080
LETSLSLGTS PSLSGHDASF STVDFDRPSD DAEYVALEIR EAQKAQGETS T

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33860.1	0.0	ARF family protein