PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1155360.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family YABBY
Protein Properties Length: 190aa    MW: 21050.7 Da    PI: 8.5916
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1155360.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY230.63.9e-7141625170
              YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsv 96 
                         +se+vCyv+CnfCntilavsvP +sl ++vtvrCGhC++llsvn+  + q  a   +      ++ l++++ ++e+ ++   +++s++ s+
  Pd.00g1155360.m01   4 MASERVCYVHCNFCNTILAVSVPCNSLQNMVTVRCGHCANLLSVNMGASLQSNALPPQ-----DPQ-LQKHHLSSEDSNKSCGSSSSSKCSK 89 
                        579*******************************************999988877776.....233.3333333333333344444444444 PP

              YABBY  97 sseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                          + +++ e ++ pr+ p irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl
  Pd.00g1155360.m01  90 FGHPFESVELHDQPRISP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 162
                        444667888999999999.9****************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    
MDLMASERVC YVHCNFCNTI LAVSVPCNSL QNMVTVRCGH CANLLSVNMG ASLQSNALPP  60
QDPQLQKHHL SSEDSNKSCG SSSSSKCSKF GHPFESVELH DQPRISPIRP PEKRQRVPSA  120
YNRFIKEEIQ RIKASNPDIS HREAFSTAAK NWAHFPHIHF GLKLDGSKQP KPDQTFAGGD  180
QGTQKSSGFY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.12e-73YABBY family protein