PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1158270.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 935aa MW: 108791 Da PI: 7.7968

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1158270.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.1	2.3e-06	155	174	6	25
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 C+f+++tG C++G rC++ H Pd.00g1158270.m01 155 CPFHLKTGACRFGQRCSRVH 174 ******************99 PP
2	zf-CCCH	25.7	2e-08	284	311	1	26
--S---SGGGGTS..--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartG..tCkyGdrCkFaHg 26 +k ++C ++++ tC++G C+F+H+ Pd.00g1158270.m01 284 WKVAICGEYMKSRykTCSRGTACNFIHC 311 899************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 935 aa Download sequence
MSEALDLFNE MRLRLLHPSL LTFVNLLGVL ADLFTLELSK QIHGLVTKYG YCLDVENEND 60 GNEVDDWDYI EEGPAEIIWQ GNEIIVKKKR IKVPKRNTEQ QSRKEDCDRP TSNPLPPQSE 120 AFSDYKNSSM SAQQLIENVA QQVPHFGTEQ DKAHCPFHLK TGACRFGQRC SRVHFYPDKS 180 STLLIKNMYN GPGLAWEQDE VLEHTDEEVE RCYEEFYEDV HTEFLKFGEI INFKVCRNGA 240 FHLRGNVYIH YKSLDSAVLA HQSINGRYFA GKQISCEFIN VTRWKVAICG EYMKSRYKTC 300 SRGTACNFIH CFRNPGGDYE WADSDRPAPK YWVRKMVALF GYSDADEKQM VEENFGQLRN 360 SSKMTMADSE RYGLRRSRSR GRDYSSFVGS GRRYDSEDYV LKDAERQRHT GDDRHRGKTL 420 DEDRCEENKN LKDYHCRKSR RSDTEFDRQL LDREEDRDRH HGHTRKSSRQ RNRDHKNKTY 480 ENESDGDLSD RARNRVAQHG CTRESSSQQR KGEFLDEYGD WQNKNHEVDR DWSDRDKDRD 540 AYHDNRKSSG HKRKVGCPDN HNDSKNRAHD MDEEWSDSNS KGGKHHSRRK RFRHISKASE 600 FLNHRGRTTR SCSYELSDDL LENDAERNLS HARKRSKRLD EVSDISDEDR FPTQNLEHRH 660 DRLSLEMREA GALVKKLKSD GTHESSSLGQ DGERYRSHDF DIRYISDVHM DKQDRWEPED 720 GSVEIFHNSK TKAGSSESYE SGRPGPYNVR GESSDFDSED KVGQEDQYES DKVAHSKHQK 780 SRRKSTHDDR KHDSENRSLC SSQSSHRRHS NRLEATDSSE DNNESGRKHN QKHHADHRSR 840 DHKQDHKSRR RNLKMLQNQG KNLTCSFQSQ DTARRVAEVQ LECKGQKQRK KRMPKSTTQP 900 KTPAAADLSV VVALVVCVCV CATGTPYTGS GTMYC

Sequence ? help Back to Top

Protein Sequence Length: 935 aa Download sequence

MSEALDLFNE MRLRLLHPSL LTFVNLLGVL ADLFTLELSK QIHGLVTKYG YCLDVENEND  60
GNEVDDWDYI EEGPAEIIWQ GNEIIVKKKR IKVPKRNTEQ QSRKEDCDRP TSNPLPPQSE  120
AFSDYKNSSM SAQQLIENVA QQVPHFGTEQ DKAHCPFHLK TGACRFGQRC SRVHFYPDKS  180
STLLIKNMYN GPGLAWEQDE VLEHTDEEVE RCYEEFYEDV HTEFLKFGEI INFKVCRNGA  240
FHLRGNVYIH YKSLDSAVLA HQSINGRYFA GKQISCEFIN VTRWKVAICG EYMKSRYKTC  300
SRGTACNFIH CFRNPGGDYE WADSDRPAPK YWVRKMVALF GYSDADEKQM VEENFGQLRN  360
SSKMTMADSE RYGLRRSRSR GRDYSSFVGS GRRYDSEDYV LKDAERQRHT GDDRHRGKTL  420
DEDRCEENKN LKDYHCRKSR RSDTEFDRQL LDREEDRDRH HGHTRKSSRQ RNRDHKNKTY  480
ENESDGDLSD RARNRVAQHG CTRESSSQQR KGEFLDEYGD WQNKNHEVDR DWSDRDKDRD  540
AYHDNRKSSG HKRKVGCPDN HNDSKNRAHD MDEEWSDSNS KGGKHHSRRK RFRHISKASE  600
FLNHRGRTTR SCSYELSDDL LENDAERNLS HARKRSKRLD EVSDISDEDR FPTQNLEHRH  660
DRLSLEMREA GALVKKLKSD GTHESSSLGQ DGERYRSHDF DIRYISDVHM DKQDRWEPED  720
GSVEIFHNSK TKAGSSESYE SGRPGPYNVR GESSDFDSED KVGQEDQYES DKVAHSKHQK  780
SRRKSTHDDR KHDSENRSLC SSQSSHRRHS NRLEATDSSE DNNESGRKHN QKHHADHRSR  840
DHKQDHKSRR RNLKMLQNQG KNLTCSFQSQ DTARRVAEVQ LECKGQKQRK KRMPKSTTQP  900
KTPAAADLSV VVALVVCVCV CATGTPYTGS GTMYC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10320.1	1e-148	C3H family protein