PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1158280.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

ARF

Protein Properties

Length: 722aa MW: 80353.4 Da PI: 6.6266

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1158280.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	69.5	4.4e-22	171	271	1	98
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k+lt sd++++g +++ +++a+++ +++ ++l+ d++g++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F Pd.00g1158280.m01 171 FCKTLTASDTSTHGGFSVLRRHADDClppldmsQQP--PWQELVAADLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFL-- 258 99**************************964333..4459********************************************.. PP SSSEE..EEEEE- CS B3 86 grsefelvvkvfr 98 + +++el+v+v+r Pd.00g1158280.m01 259 RGENGELRVGVRR 271 449999***97 PP
2	Auxin_resp	108.7	6.1e-36	297	379	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t++ F+v+Y+Pr+s+seF v+v+k+++a ++k+svGmRfkm+fe+e+++err+sGt+vgv d + W nS+WrsLk Pd.00g1158280.m01 297 ASHAIATGTLFSVFYKPRTSRSEFLVSVNKYLEAHSHKLSVGMRFKMRFEGEEVPERRFSGTIVGVCDNTSPGWANSEWRSLK 379 789******************************************************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 722 aa Download sequence
MGWETRGVRC RDFRFTIHSA GSFLSADQLS GKASGVGEHL FSFAMTFSAS NHPQGSSRIG 60 TSGDALYKEL WHACAGPLVS LPREGERVYY FPQGHMEQLE ASMHQGSEQQ MPSFNLPSKI 120 LCKVVNVQLR AEPETDEVYA QVTLLPEADQ SEITSPDPPL PETPRCTVHS FCKTLTASDT 180 STHGGFSVLR RHADDCLPPL DMSQQPPWQE LVAADLHGNE WHFRHIFRGQ PRRHLLTTGW 240 SVFVSSKKLV AGDAFIFLRG ENGELRVGVR RLMRQPSNMP SSVISSHSMH LGVLATASHA 300 IATGTLFSVF YKPRTSRSEF LVSVNKYLEA HSHKLSVGMR FKMRFEGEEV PERRFSGTIV 360 GVCDNTSPGW ANSEWRSLKV QWDEPSSILR PDRVSPWELE PLVATTPLNS QPALRNKRAR 420 PPVLPSPSPD LSALGEWKSQ VESPSAFSYS DPQRGRDIYP SPKYNSASKA NSLCFTGNNS 480 LAAVSVNSMF WSNRVDGVTE PFSPITNKDS GERRQGTGNG CRLFGIQLLE NSNVEESSPV 540 VMVSGKLGDI RPISSFDAES DQHSEPSNVN RSDLPSGSCD AEKSCLRSPQ ESQSRQIRSC 600 TKVHMQGIAV GRAVDLTRFE RYKDLLKKLE EMFDIEGELC GSTKKWQVVY TDDEDDMMMV 660 GDDPWHEFCS MVRKIFIYTI EEVKRLSPKI KLTLNEEVKP GKPDSEAAVN TEDQSSIVGP 720 AY

Sequence ? help Back to Top

Protein Sequence Length: 722 aa Download sequence

MGWETRGVRC RDFRFTIHSA GSFLSADQLS GKASGVGEHL FSFAMTFSAS NHPQGSSRIG  60
TSGDALYKEL WHACAGPLVS LPREGERVYY FPQGHMEQLE ASMHQGSEQQ MPSFNLPSKI  120
LCKVVNVQLR AEPETDEVYA QVTLLPEADQ SEITSPDPPL PETPRCTVHS FCKTLTASDT  180
STHGGFSVLR RHADDCLPPL DMSQQPPWQE LVAADLHGNE WHFRHIFRGQ PRRHLLTTGW  240
SVFVSSKKLV AGDAFIFLRG ENGELRVGVR RLMRQPSNMP SSVISSHSMH LGVLATASHA  300
IATGTLFSVF YKPRTSRSEF LVSVNKYLEA HSHKLSVGMR FKMRFEGEEV PERRFSGTIV  360
GVCDNTSPGW ANSEWRSLKV QWDEPSSILR PDRVSPWELE PLVATTPLNS QPALRNKRAR  420
PPVLPSPSPD LSALGEWKSQ VESPSAFSYS DPQRGRDIYP SPKYNSASKA NSLCFTGNNS  480
LAAVSVNSMF WSNRVDGVTE PFSPITNKDS GERRQGTGNG CRLFGIQLLE NSNVEESSPV  540
VMVSGKLGDI RPISSFDAES DQHSEPSNVN RSDLPSGSCD AEKSCLRSPQ ESQSRQIRSC  600
TKVHMQGIAV GRAVDLTRFE RYKDLLKKLE EMFDIEGELC GSTKKWQVVY TDDEDDMMMV  660
GDDPWHEFCS MVRKIFIYTI EEVKRLSPKI KLTLNEEVKP GKPDSEAAVN TEDQSSIVGP  720
AY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59750.4	0.0	ARF family protein