PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1161720.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 679aa MW: 74277.9 Da PI: 9.5106

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1161720.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.8	3.9e-05	93	115	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Pd.00g1161720.m01 93 FVCEICKKGFQRDQNLQLHRRGH 115 89*******************88 PP
2	zf-C2H2	11.6	0.00084	169	191	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ Pd.00g1161720.m01 169 WKCDKCSKKYAVQSDWKAHSKTC 191 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 679 aa Download sequence
MSIITGSAAG SFSSGNTGGE EVQQQQQQEL LNHANFHGSN SFLSTTPPII NSNGTQPKQP 60 PQAKRKRNLP GTPDPSAEVV ALSPKTLMAT NRFVCEICKK GFQRDQNLQL HRRGHNLPWK 120 LKQRTSTEII KRVYVCPEPS CVHHDPSRAL GDLTGIKKHF CRKHGEKKWK CDKCSKKYAV 180 QSDWKAHSKT CGTREYKCDC GTIFSRRDSF ITHRAFCDAI AEENNTANQG VLMSNINMGA 240 PILQVPQQPL PMSSKPLNML PRSLNNNNNT SSSSPSPLLF ELSRGHGLIP SSSGHLSATE 300 LLQKAAQMGA TMSSTSPSPS GTTITSMAPS TYGTTTAGGY NVNPFMQHRD HHNVNVGPQL 360 ENSFFGANNY AQMGMYGGLL FDPHQNNGLL KNMEQDNNGN SSKLGLRGTN RCITIQSSGG 420 NWKERPLADQ FAPLESGFRR RLLVGLGSAS LVVLGANFVG TTSFLLGLSP ESSRSLKLDV 480 LYPIGGYSRC IDTNEGFEFI YPASWVGDQT LLYRAAEKKE FERSLDPPPL NINTKSRADT 540 GRRGNVSEPV VAFGPPASTG ELNVSVIVSP VPLDFKIEAF GGPKEVGEAV VRTVAGSGKR 600 PDVRGTLIRT NLREDSLKNI KYYELEFRVE SPLFHRHNIA VCCARGGRLF TLNAQAPESA 660 WPEVKSDFHR IAESFSLTS

Sequence ? help Back to Top

Protein Sequence Length: 679 aa Download sequence

MSIITGSAAG SFSSGNTGGE EVQQQQQQEL LNHANFHGSN SFLSTTPPII NSNGTQPKQP  60
PQAKRKRNLP GTPDPSAEVV ALSPKTLMAT NRFVCEICKK GFQRDQNLQL HRRGHNLPWK  120
LKQRTSTEII KRVYVCPEPS CVHHDPSRAL GDLTGIKKHF CRKHGEKKWK CDKCSKKYAV  180
QSDWKAHSKT CGTREYKCDC GTIFSRRDSF ITHRAFCDAI AEENNTANQG VLMSNINMGA  240
PILQVPQQPL PMSSKPLNML PRSLNNNNNT SSSSPSPLLF ELSRGHGLIP SSSGHLSATE  300
LLQKAAQMGA TMSSTSPSPS GTTITSMAPS TYGTTTAGGY NVNPFMQHRD HHNVNVGPQL  360
ENSFFGANNY AQMGMYGGLL FDPHQNNGLL KNMEQDNNGN SSKLGLRGTN RCITIQSSGG  420
NWKERPLADQ FAPLESGFRR RLLVGLGSAS LVVLGANFVG TTSFLLGLSP ESSRSLKLDV  480
LYPIGGYSRC IDTNEGFEFI YPASWVGDQT LLYRAAEKKE FERSLDPPPL NINTKSRADT  540
GRRGNVSEPV VAFGPPASTG ELNVSVIVSP VPLDFKIEAF GGPKEVGEAV VRTVAGSGKR  600
PDVRGTLIRT NLREDSLKNI KYYELEFRVE SPLFHRHNIA VCCARGGRLF TLNAQAPESA  660
WPEVKSDFHR IAESFSLTS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	3e-98	C2H2 family protein