PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1162200.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 229aa MW: 25833.8 Da PI: 4.405

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1162200.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	97.8	1.1e-30	8	109	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +C aCk+l+++C+++C++apyf +e+ +f +h +FGas+++++l+ lp +er a ++++eA+ara dP yG+v+ il+lq+q+ + + Pd.00g1162200.m01 8 PCGACKFLKKRCKRGCIFAPYFMHEEaIMDFSSIHNVFGASKMSRILSMLPMSERAVASWTMTFEAHARAVDPTYGCVSYILDLQEQVLNIQ 99 7*******************9998469*********************************************************** PP DUF260 92 aelallkeel 101 a l++++e+l Pd.00g1162200.m01 100 ARLDEAHEQL 109 **999985 PP

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence
MSSRTFNPCG ACKFLKKRCK RGCIFAPYFM HEEAIMDFSS IHNVFGASKM SRILSMLPMS 60 ERAVASWTMT FEAHARAVDP TYGCVSYILD LQEQVLNIQA RLDEAHEQLA RAVAPVANPN 120 QDLENSNEQS EVANPTEQAA VAKPTEFESL PQFSFTHTNN VDNENMNLNY HVSGSYKNTV 180 NIPTENVADG WVNNEGTSSM SFFDMEWSFE DVDELLVDPW FSTYISNIN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58190.1	1e-42	LBD family protein