PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1165200.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 201aa    MW: 22785.4 Da    PI: 9.4911
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1165200.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF62.45e-201962245
                       ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
             SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                       +i   sn qvtf+kRr g++KKA+EL++ C++e+a+++fs+ +k
  Pd.00g1165200.m01 19 KIAKRSNLQVTFCKRRSGLFKKASELCTVCGVEIAIVVFSPANK 62
                       577899***********************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    
MVIMKKKPGQ GRQKIPIAKI AKRSNLQVTF CKRRSGLFKK ASELCTVCGV EIAIVVFSPA  60
NKPFSFGHPH VEPILDRFLC TPKPSIDSDF TSQQLLVDQA QGYMSDTSVH ELNMVLTQTQ  120
KHLEAEKKRG QELDEMSKAG QGSSRRYWWE NPIDEMGLHE IQILKAAMKE VKKNVIEQVN  180
KILKIQSCAA VNSQYHSSDE W
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-52M-type_MADS family protein