PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1171340.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 430aa MW: 47753.5 Da PI: 4.6837

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1171340.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	93.6	2.2e-29	10	110	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +C aCk+l+++C+++C++apyf +e+ +f +h +FGa++++++l+ lp +er a ++++eA+ara dP+yGa++ il+lq+q+ + + Pd.00g1171340.m01 10 PCGACKFLKKRCKRGCIFAPYFMHEEaITDFSSIHNVFGANKMSRILSMLPMSERAVASWTMTFEAHARAVDPIYGATSYILDLQEQVLNIQ 101 7*******************999856************************************************************ PP DUF260 92 aelallkee 100 a+l+++ e+ Pd.00g1171340.m01 102 AQLDEAYEQ 110 *988766 PP
2	DUF260	51.7	2.6e-16	200	270	27	97
DUF260 27 pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +f +h +FGa++++++l+ lp +e++ a ++++eA+ara dP yG+v+ il+lq+ql++++++la++ Pd.00g1171340.m01 200 ITDFSSIHNVFGARKMSRILSMLPMSEHTVASWTMTFEAHARAVDPTYGCVSYILDLQEQLDEAHEQLARA 270 47899**************************************************************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence
MSSRTRTFNP CGACKFLKKR CKRGCIFAPY FMHEEAITDF SSIHNVFGAN KMSRILSMLP 60 MSERAVASWT MTFEAHARAV DPIYGATSYI LDLQEQVLNI QAQLDEAYEQ LACAIAPIAD 120 LNQDLENSIE QSEVANPTEQ AAVAKPTEFE SLPQFSFTHI NNVYNENMNL NYHVSGSYKN 180 TVNIPKENVA DGWVNNEEAI TDFSSIHNVF GARKMSRILS MLPMSEHTVA SWTMTFEAHA 240 RAVDPTYGCV SYILDLQEQL DEAHEQLARA VAPVANPNQD LENSNEQSEA ANPTEQAAVA 300 KPTEFESLPQ FSFTHTNNVD NENMNLNYHV SGSYKNTVNI PTENVADGWV NNEGQIASGA 360 SSGDIALKFG EYILPEMLGT FALSVGSAVG MEFWARWAHR ALWHSSLWHM HMCLITNLGM 420 ALSSSTISLP

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence

MSSRTRTFNP CGACKFLKKR CKRGCIFAPY FMHEEAITDF SSIHNVFGAN KMSRILSMLP  60
MSERAVASWT MTFEAHARAV DPIYGATSYI LDLQEQVLNI QAQLDEAYEQ LACAIAPIAD  120
LNQDLENSIE QSEVANPTEQ AAVAKPTEFE SLPQFSFTHI NNVYNENMNL NYHVSGSYKN  180
TVNIPKENVA DGWVNNEEAI TDFSSIHNVF GARKMSRILS MLPMSEHTVA SWTMTFEAHA  240
RAVDPTYGCV SYILDLQEQL DEAHEQLARA VAPVANPNQD LENSNEQSEA ANPTEQAAVA  300
KPTEFESLPQ FSFTHTNNVD NENMNLNYHV SGSYKNTVNI PTENVADGWV NNEGQIASGA  360
SSGDIALKFG EYILPEMLGT FALSVGSAVG MEFWARWAHR ALWHSSLWHM HMCLITNLGM  420
ALSSSTISLP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58190.1	4e-38	LBD family protein