PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1172610.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

Trihelix

Protein Properties

Length: 380aa MW: 44435.4 Da PI: 6.1706

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1172610.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	87.8	1.2e-27	55	151	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcp 80 +Wt+q+v++Li+a+++++e+ ++++ +kk++W++vsk+m+ergf++sp+qC++k+++lnkrykk++++ +++ +++++++ + Pd.00g1172610.m01 55 KWTDQMVKLLITAVSYIGEDTSSDCgsggrrkystlQKKGKWKSVSKVMAERGFHVSPQQCEDKFNDLNKRYKKLNDMLGRGtSCQVVENQA 146 7*******************99888899999999********************************************6699999988 PP trihelix 81 yfdql 85 ++d + Pd.00g1172610.m01 147 LLDVI 151 87765 PP

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence
MHTCDQTISM MDYNKGERSK NSASDEDEPS YTEEGTDGHA EGNRGKKGSP WQRVKWTDQM 60 VKLLITAVSY IGEDTSSDCG SGGRRKYSTL QKKGKWKSVS KVMAERGFHV SPQQCEDKFN 120 DLNKRYKKLN DMLGRGTSCQ VVENQALLDV IDYLTEKEKD DVRKILSSKH LFYEEMCSYH 180 NGNRLHLPHD PALQKSLQRA LRRDEHDNDD LRRHHHDDLD EDDQDMETDE HEDFEENNAS 240 HGDNRGIYVL EDSVKRLRQG PGREEFNYGS SLNPQDCNKS SYCHPPIPQA DMNQVLPDGT 300 KAAWLQKQWI ESRSLQLEEQ KLQIQVEMLE LEKQRFKWQR FSKKRDRELE KLRMENERMK 360 LENERMALEL KRKEMGAGFS

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence

MHTCDQTISM MDYNKGERSK NSASDEDEPS YTEEGTDGHA EGNRGKKGSP WQRVKWTDQM  60
VKLLITAVSY IGEDTSSDCG SGGRRKYSTL QKKGKWKSVS KVMAERGFHV SPQQCEDKFN  120
DLNKRYKKLN DMLGRGTSCQ VVENQALLDV IDYLTEKEKD DVRKILSSKH LFYEEMCSYH  180
NGNRLHLPHD PALQKSLQRA LRRDEHDNDD LRRHHHDDLD EDDQDMETDE HEDFEENNAS  240
HGDNRGIYVL EDSVKRLRQG PGREEFNYGS SLNPQDCNKS SYCHPPIPQA DMNQVLPDGT  300
KAAWLQKQWI ESRSLQLEEQ KLQIQVEMLE LEKQRFKWQR FSKKRDRELE KLRMENERMK  360
LENERMALEL KRKEMGAGFS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-157	Trihelix family protein