PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g117630.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 189aa    MW: 20412.2 Da    PI: 7.337
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g117630.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260129.12e-40141131100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +CaaCk+l+rkC++ C++apyf  ++pkkfa vhk+FGasnv+k+l+++pee+red+++sl+yeAear+rdPvyG++g i  lq+++ +l+++
  Pd.00g117630.m01  14 SCAACKLLKRKCSPTCIFAPYFLPDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIAMLQRKMIELQHD 106
                       6******************************************************************************************** PP

            DUF260  94 lallkee 100
                       la ++++
  Pd.00g117630.m01 107 LAIARAR 113
                       *999875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    
MNMKGSHEPR SSSSCAACKL LKRKCSPTCI FAPYFLPDEP KKFAKVHKVF GASNVSKILT  60
EVPEEQREDT VNSLAYEAEA RLRDPVYGCI GAIAMLQRKM IELQHDLAIA RARLACYASN  120
SLSSSPPTAS ASSCYGVLDD QLSEAAFSAV GFPACSGFSN SFMSQSAPEL ISHSQHGQTS  180
DFSCAPYIL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11090.18e-63LBD family protein