PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1176850.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 582aa    MW: 64947.9 Da    PI: 4.8954
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1176850.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS451.36.3e-1382135822374
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                        ++lL++cA a+s+g+ + a++++++l++++s +gdp qR+aay++e+Laar+a+s++ ly++l+++e +   ss +laa+++++ev+P++kf
  Pd.00g1176850.m01 213 KQLLYNCAGALSEGNIKGASTMISELRQMVSIQGDPAQRIAAYMVEGLAARVASSGKFLYRSLKCKEPP---SSYRLAAMQVLFEVCPCFKF 301
                        589*****************************************************************9...9******************* PP

               GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlva 183
                        ++++aN aI ea + e++vHiiDfdi+qG Q++ L+q+La+R ++pp+lR+Tgv++pes+      l+++g+rL+k+Ae+l+vpfef++ va
  Pd.00g1176850.m01 302 GFMAANGAIIEACKDEKKVHIIDFDINQGNQYIKLIQTLANRLGKPPHLRLTGVDDPESVqrPVGGLNNIGQRLEKLAEALKVPFEFQA-VA 392
                        **********************************************************99888899***********************.7* PP

               GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275
                        +r++ +++++L+++pgEal Vn+++qlh+++desvs+ ++rd++L++vksl+Pk+v+vveq++++n+++F+ rf+ea +yysa+fdsl+a l
  Pd.00g1176850.m01 393 SRTSIVNTSMLDCRPGEALLVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLRPKLVTVVEQDVNTNTTPFFPRFIEAYNYYSAVFDSLDAAL 484
                        ******************************************************************************************** PP

               GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367
                        pres++r++vE+++l+r+ivn+vaceg+er+er e ++kWr+r+++aGF++ p+s++++++++ l+r + ++ y+v+ee g+l +gW++++L
  Pd.00g1176850.m01 485 PRESQDRMNVEKQCLARDIVNIVACEGEERIERYEVAGKWRARMTMAGFTSCPMSTSITDSIRELIRPYCDR-YKVKEEAGALHFGWENKSL 575
                        *********************************************************************966.******************* PP

               GRAS 368 vsvSaWr 374
                        +++SaWr
  Pd.00g1176850.m01 576 IVASAWR 582
                        ******8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    
MSLVRPAELS ATSYRNPKLY SPKGSNDSST LSTQTFSSDK HKTLYVADPY SAESYEDFLD  60
SPMEEIANPS SSGISGNSAN PQGDSSYQLR AGSVSSLNTQ NPFNTFLMSM RQHNAYQSNF  120
ESDYFESQSP DADSFDEDKM RLKLQELERA LLEDNDEEIN CSSQSMEVDG EWTDPIQNEL  180
LHDSPKESSS SESNVSSISS NKEISQASPQ TPKQLLYNCA GALSEGNIKG ASTMISELRQ  240
MVSIQGDPAQ RIAAYMVEGL AARVASSGKF LYRSLKCKEP PSSYRLAAMQ VLFEVCPCFK  300
FGFMAANGAI IEACKDEKKV HIIDFDINQG NQYIKLIQTL ANRLGKPPHL RLTGVDDPES  360
VQRPVGGLNN IGQRLEKLAE ALKVPFEFQA VASRTSIVNT SMLDCRPGEA LLVNFAFQLH  420
HMPDESVSTV NQRDQLLRMV KSLRPKLVTV VEQDVNTNTT PFFPRFIEAY NYYSAVFDSL  480
DAALPRESQD RMNVEKQCLA RDIVNIVACE GEERIERYEV AGKWRARMTM AGFTSCPMST  540
SITDSIRELI RPYCDRYKVK EEAGALHFGW ENKSLIVASA WR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0GRAS family protein