PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1176860.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MYB

Protein Properties

Length: 359aa MW: 40913.2 Da PI: 9.5448

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1176860.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.9	4.9e-18	15	60	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ede+l ++v+q+G +W++Ia++++ gR++k+c++rw++ Pd.00g1176860.m01 15 RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQ-GRSGKSCRLRWFNQ 60 899***************************.*********996 PP
2	Myb_DNA-binding	58.7	1.3e-18	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++++eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ Pd.00g1176860.m01 67 RRPFSEEEEERLLAAHRIHGNK-WALIARLFP-GRTDNAVKNHWHV 110 679*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence
MDEYGDEAKS TTCPRGHWRP AEDEKLRQLV EQYGAQNWNS IAEKLQGRSG KSCRLRWFNQ 60 LDPRINRRPF SEEEEERLLA AHRIHGNKWA LIARLFPGRT DNAVKNHWHV IMARRQREQS 120 KVCGKRSYQD FCNDHSSNTS SISNNFDVSR KFKSQGELRS SSSIGFDQNS STKFFEFRNP 180 NKDRTTMFMD SRHASSSPYN WNFATMSTTS NNAASSSVGL LGRERRDYFN NVSSNNISGC 240 SKGSDHQFVH RRNNPTTSSF MYGSYIGSTS AFGLPNYKRV NVPSPFGCLG LGDHINRPEQ 300 HGRTFKKELA NFCDNASTLA KWRVAATAKF GDHDCQDHES IDHHKETPFI DFLGVGISS

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence

MDEYGDEAKS TTCPRGHWRP AEDEKLRQLV EQYGAQNWNS IAEKLQGRSG KSCRLRWFNQ  60
LDPRINRRPF SEEEEERLLA AHRIHGNKWA LIARLFPGRT DNAVKNHWHV IMARRQREQS  120
KVCGKRSYQD FCNDHSSNTS SISNNFDVSR KFKSQGELRS SSSIGFDQNS STKFFEFRNP  180
NKDRTTMFMD SRHASSSPYN WNFATMSTTS NNAASSSVGL LGRERRDYFN NVSSNNISGC  240
SKGSDHQFVH RRNNPTTSSF MYGSYIGSTS AFGLPNYKRV NVPSPFGCLG LGDHINRPEQ  300
HGRTFKKELA NFCDNASTLA KWRVAATAKF GDHDCQDHES IDHHKETPFI DFLGVGISS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G73410.1	4e-62	MYB family protein