PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1182650.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 830aa MW: 91904.6 Da PI: 8.6124

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1182650.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.6	3.8e-07	188	208	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C +fa+ G C++G++CkF H Pd.00g1182650.m01 188 YCTDFAK-GKCRRGSSCKFDHH 208 5****.***********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 830 aa Download sequence
MSRSSRKRSS KWDLAEEPQF EDANVQDNGW MGKPETNDMQ RSKHDLGLAS REPLPGSRGS 60 HKIESINKGN NRYMDDSMVW DGDGNCSTRM SPGLDEWRQH RSRSPKSGWS RRESVFLDRN 120 RSRSGVSAQL CKDFTAGRCR RASDCQFLHE GSSNYDDSWE SRHRKGGASK YSPDTGDYPL 180 KSGRSSVYCT DFAKGKCRRG SSCKFDHHRA SDGYSKGSMN ERENERRKRD ASTERGTDRV 240 PHRSGDIPCK FFAVGNCRNK KYCRFSHHIQ ARVSPERKSR DGRWGLSDAG PAWDGPKWSD 300 TVALSDASKL TADNNGNISV PELRPSAWSM DDNRWGHGLN NDNQKCADPS VIHEAVQRNE 360 KDTHMWKEDN AGAHVGPPKS RDTEKWLGDM SPDWNYTVQS SNHVGKEEHS GNALGSEPSS 420 QVHGAASIMQ PMIAERSNFL QNKDMREDGA IPLPYDDRNP IEKNASSRND LNVSANIMPR 480 QSFDNSGQSS SAFPFSGLST VRQSQTLIPT HPQGGGIVKS PQDTLSSESK SVIKLDIGDA 540 KTSLVTGIPQ VPNVVGDKEL VQLTNLSASL AQFLGNHQQH SQYFAVLNSQ NAPPPLAKSE 600 GSSEQLSAAA IQPDPVISEK PYDPIHDSRE LRNSNNPVFL LPNNAENTSV DGKVDKPSNV 660 VSPSSFPSGA NGSDYLQAHN LVEPKQKNCQ LSQVEPLAKS EIVKGNSEFG AQESKNVKEE 720 SKSPDIGPLE GTEKDGAEEG KKSKEVKGSR AFKFALVEFV KDLLKPTWRD GQINKDAYKT 780 IVKKVVDKVT STMQGANIPQ TQEKIDHYLS FSKPKLTKLV QAYVEKMQKG

Sequence ? help Back to Top

Protein Sequence Length: 830 aa Download sequence

MSRSSRKRSS KWDLAEEPQF EDANVQDNGW MGKPETNDMQ RSKHDLGLAS REPLPGSRGS  60
HKIESINKGN NRYMDDSMVW DGDGNCSTRM SPGLDEWRQH RSRSPKSGWS RRESVFLDRN  120
RSRSGVSAQL CKDFTAGRCR RASDCQFLHE GSSNYDDSWE SRHRKGGASK YSPDTGDYPL  180
KSGRSSVYCT DFAKGKCRRG SSCKFDHHRA SDGYSKGSMN ERENERRKRD ASTERGTDRV  240
PHRSGDIPCK FFAVGNCRNK KYCRFSHHIQ ARVSPERKSR DGRWGLSDAG PAWDGPKWSD  300
TVALSDASKL TADNNGNISV PELRPSAWSM DDNRWGHGLN NDNQKCADPS VIHEAVQRNE  360
KDTHMWKEDN AGAHVGPPKS RDTEKWLGDM SPDWNYTVQS SNHVGKEEHS GNALGSEPSS  420
QVHGAASIMQ PMIAERSNFL QNKDMREDGA IPLPYDDRNP IEKNASSRND LNVSANIMPR  480
QSFDNSGQSS SAFPFSGLST VRQSQTLIPT HPQGGGIVKS PQDTLSSESK SVIKLDIGDA  540
KTSLVTGIPQ VPNVVGDKEL VQLTNLSASL AQFLGNHQQH SQYFAVLNSQ NAPPPLAKSE  600
GSSEQLSAAA IQPDPVISEK PYDPIHDSRE LRNSNNPVFL LPNNAENTSV DGKVDKPSNV  660
VSPSSFPSGA NGSDYLQAHN LVEPKQKNCQ LSQVEPLAKS EIVKGNSEFG AQESKNVKEE  720
SKSPDIGPLE GTEKDGAEEG KKSKEVKGSR AFKFALVEFV KDLLKPTWRD GQINKDAYKT  780
IVKKVVDKVT STMQGANIPQ TQEKIDHYLS FSKPKLTKLV QAYVEKMQKG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	2e-11	C3H family protein