PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1188010.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

ARF

Protein Properties

Length: 737aa MW: 82607.8 Da PI: 6.3488

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1188010.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	32.8	1.2e-10	105	149	53	99
EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 53 rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ++++r++lt+GW+ Fv+a++L +gD+v+F ++++ +l+++++r+ Pd.00g1188010.m01 105 AGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQLLLGIRRA 149 678999***********************..8899999**997 PP
2	Auxin_resp	106.2	3.7e-35	158	234	8	83
Auxin_resp 8 ksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 +sv +++YnPras+seFv++++k+ ka+ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k Pd.00g1188010.m01 158 SSVLSIFYNPRASPSEFVIPLSKYIKAVFhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 234 67889*******************986599****************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 737 aa Download sequence
MELGIPSKQP TNYFCKTLTA SDTSTHGGFS VPRRAAEKVF PPLDFSLQPP AQELIARDLH 60 DVEWKFRHIF RVLDRLALSD ISGALAVGVV AWRKQCMTPN TGTFAGQPKR HLLTTGWSVF 120 VSAKRLVAGD SVLFIWNEKN QLLLGIRRAT RPQTVMPSSV LSIFYNPRAS PSEFVIPLSK 180 YIKAVFHTRV SVGMRFRMLF ETEESSVRRY MGTITGISDL DPVRWPNSHW RSVKVGWDES 240 TAGERQPRVS LWEIEPLTTF PMYPSLFPLR LKRPWHPGAS SMQDNRDDAN SLMWLRGGTG 300 EQGLHSMNFQ PVGMFPWMQQ RLDSTLIGND HNPQYQAMLA AGLQNLGSGD QLRQHMMHFQ 360 QPFQYVQQSS SHNPMLQLQQ QIQQSIPHNI LQAQPQVSLE NLPQHLLQQQ FNNQTEEQVQ 420 QQQNTYHDAL KVQTEQLQQS QQMNVSSPSF PKTDFSDSNT KFSASTTPRQ NMLGTLCPEG 480 SGNLLSSSRA GHSMPTEQLP QQSWAPKYAH AQVNAFANSM SFPPFNEKDN AVEQENCNSD 540 SQNPTLFGVN IESSGLLFPT TAPSFATSSN DADMSMPLGD SGFQSSLYGC MQDSSELLHS 600 AGQVDPPTPN CTFVKVYKSG SVGRSLDISR FSSYHELREE LGQMFGIEGK LEDRLRSGWQ 660 LVFVDRENDV LLLGDDPWES FVNNVWYIKI LSPEDVHKMG DQAVEPFSPN TGQRLNSGGG 720 EAQDIVSGLP SLGSLEY

Sequence ? help Back to Top

Protein Sequence Length: 737 aa Download sequence

MELGIPSKQP TNYFCKTLTA SDTSTHGGFS VPRRAAEKVF PPLDFSLQPP AQELIARDLH  60
DVEWKFRHIF RVLDRLALSD ISGALAVGVV AWRKQCMTPN TGTFAGQPKR HLLTTGWSVF  120
VSAKRLVAGD SVLFIWNEKN QLLLGIRRAT RPQTVMPSSV LSIFYNPRAS PSEFVIPLSK  180
YIKAVFHTRV SVGMRFRMLF ETEESSVRRY MGTITGISDL DPVRWPNSHW RSVKVGWDES  240
TAGERQPRVS LWEIEPLTTF PMYPSLFPLR LKRPWHPGAS SMQDNRDDAN SLMWLRGGTG  300
EQGLHSMNFQ PVGMFPWMQQ RLDSTLIGND HNPQYQAMLA AGLQNLGSGD QLRQHMMHFQ  360
QPFQYVQQSS SHNPMLQLQQ QIQQSIPHNI LQAQPQVSLE NLPQHLLQQQ FNNQTEEQVQ  420
QQQNTYHDAL KVQTEQLQQS QQMNVSSPSF PKTDFSDSNT KFSASTTPRQ NMLGTLCPEG  480
SGNLLSSSRA GHSMPTEQLP QQSWAPKYAH AQVNAFANSM SFPPFNEKDN AVEQENCNSD  540
SQNPTLFGVN IESSGLLFPT TAPSFATSSN DADMSMPLGD SGFQSSLYGC MQDSSELLHS  600
AGQVDPPTPN CTFVKVYKSG SVGRSLDISR FSSYHELREE LGQMFGIEGK LEDRLRSGWQ  660
LVFVDRENDV LLLGDDPWES FVNNVWYIKI LSPEDVHKMG DQAVEPFSPN TGQRLNSGGG  720
EAQDIVSGLP SLGSLEY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G37020.1	0.0	ARF family protein