PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1188350.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

M-type_MADS

Protein Properties

Length: 598aa MW: 67749.4 Da PI: 6.5738

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1188350.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	71.5	7.4e-23	327	370	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + e++ nrqvtfskRrngilKKA+ELS+LCd+++ +++fs+tg+ Pd.00g1188350.m01 327 KLESSGNRQVTFSKRRNGILKKAKELSILCDVDIVLLMFSPTGR 370 67999*************************************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 598 aa Download sequence
MTIPQTRNFG LPFMNLIRLK GIPILQQLHL EEQLLRTSSD NWCIMNDGTK DPTIVMACVE 60 YVALTEYSGF SILLVVKGSV YVLHSILFIY PFFALEIVKG SVYVLHRKPA ELLELDLVLR 120 DQIPVIRRFT GGGTVTVDHN TVFVTFICNT DAVAGLQPYP RPIMSWSSLL YSRVFEGRGD 180 FQLRENDYVF GNRKFGGNAQ SITKTRWIHH TSFLWDYEVR NMAYLRLPKR IPEYRLARDR 240 LEFICCLKDY IPRSVFLDRT VDALRTQFSV RSEQLDAFEA TSNAKFVPST RLLTRQELEE 300 AAFGSHAEST LSQSLSLMGR VKLKIKKLES SGNRQVTFSK RRNGILKKAK ELSILCDVDI 360 VLLMFSPTGR PTLLQGERSF WCNPGKVDNL EHLSQMEDML KESINRTRLH KFQNGMPSSL 420 LVGGMPEAQP LTWLLSNDNQ HMILPNESNY LPHRDVDVEC STNASVPQYT SYFGTGASTS 480 TGKQSEVGDP VQLDNMGQIP NMEGGGGLNE FDINACLSTE PGQQYVYPSY CSSNVDDKTL 540 KPEMEMNLPT NPVGYQVSSD FELPRSMYED EHHAWLSSTG PSGIAVYKEN TYQQVTIL

Sequence ? help Back to Top

Protein Sequence Length: 598 aa Download sequence

MTIPQTRNFG LPFMNLIRLK GIPILQQLHL EEQLLRTSSD NWCIMNDGTK DPTIVMACVE  60
YVALTEYSGF SILLVVKGSV YVLHSILFIY PFFALEIVKG SVYVLHRKPA ELLELDLVLR  120
DQIPVIRRFT GGGTVTVDHN TVFVTFICNT DAVAGLQPYP RPIMSWSSLL YSRVFEGRGD  180
FQLRENDYVF GNRKFGGNAQ SITKTRWIHH TSFLWDYEVR NMAYLRLPKR IPEYRLARDR  240
LEFICCLKDY IPRSVFLDRT VDALRTQFSV RSEQLDAFEA TSNAKFVPST RLLTRQELEE  300
AAFGSHAEST LSQSLSLMGR VKLKIKKLES SGNRQVTFSK RRNGILKKAK ELSILCDVDI  360
VLLMFSPTGR PTLLQGERSF WCNPGKVDNL EHLSQMEDML KESINRTRLH KFQNGMPSSL  420
LVGGMPEAQP LTWLLSNDNQ HMILPNESNY LPHRDVDVEC STNASVPQYT SYFGTGASTS  480
TGKQSEVGDP VQLDNMGQIP NMEGGGGLNE FDINACLSTE PGQQYVYPSY CSSNVDDKTL  540
KPEMEMNLPT NPVGYQVSSD FELPRSMYED EHHAWLSSTG PSGIAVYKEN TYQQVTIL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03060.1	2e-39	M-type_MADS family protein