PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1192310.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 462aa    MW: 50298.3 Da    PI: 8.5435
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1192310.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.49e-1274100127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        ++++ C +++rtG C yG++C+F+H++
  Pd.00g1192310.m01  74 PGEPDCIYYLRTGLCGYGSNCRFNHPK 100
                        5789*********************96 PP
2zf-CCCH38.52e-12118142327
                        S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                        ++ C +f++tGtCkyG++CkF+H++
  Pd.00g1192310.m01 118 QPDCGYFLKTGTCKYGSTCKFHHPR 142
                        789********************96 PP
3zf-CCCH382.7e-12165187527
                        --SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                         C++++rtG Ck+G+ CkF+H++
  Pd.00g1192310.m01 165 SCPYYMRTGSCKFGPACKFHHPQ 187
                        6********************97 PP
4zf-CCCH36.11.1e-11303328227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                        ++++Cr+f+ tGtCkyG  Ck++H++
  Pd.00g1192310.m01 303 DQPECRYFMSTGTCKYGIDCKYHHPK 328
                        689*********************96 PP
5zf-CCCH33.47.5e-11345371127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        +++++C+++  +G+CkyG++C+F H++
  Pd.00g1192310.m01 345 PGQPPCSYYIMYGICKYGPTCRFDHPF 371
                        5899*********************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    
MSLIGETERS RAKQNKGRVY TTSVLPMPDI RQALRNAVPN QSDGNVEETF RRLNINDNQD  60
GGGVAQSNPY PDRPGEPDCI YYLRTGLCGY GSNCRFNHPK YGSQGAQYNG ELPERVGQPD  120
CGYFLKTGTC KYGSTCKFHH PRDRRGAGPV VFNILGLPMH QEEKSCPYYM RTGSCKFGPA  180
CKFHHPQPQS LGTVLPAFGA AGSTVLPSSG LPYAGGLSAW SFPRAPYLSG PRLQSPHSYM  240
PVVLPPQGIV PAHGWNTYVG NISPVTSTGI LGSNLTYNSR TQGESASNGQ VHLSSSSLPH  300
RPDQPECRYF MSTGTCKYGI DCKYHHPKER IAESATHPLG LPSRPGQPPC SYYIMYGICK  360
YGPTCRFDHP FVEHSAGYNF GMNALPLDSA LLSYPRSWSV AHVAHGLETS PSISSKFPDG  420
VKKPVNKKYE NSDRKTAEDS PEQAGSAPPS PTSSEPVQDQ SG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-117C3H family protein