PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1193420.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 438aa    MW: 49465.9 Da    PI: 8.3066
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1193420.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.21e-06731127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                       +kt+lC  ++r G C + ++C+FaHg+
  Pd.00g1193420.m01  7 FKTKLCVLYQR-GRCAR-ESCSFAHGQ 31
                       69*********.*****.*******97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    
MVERKLFKTK LCVLYQRGRC ARESCSFAHG QAELRRFSGS FDGRRDSGGD DLRDKLERRY  60
SPRRRYSPER DARGRHVLRA EYSPSRSLER ENFEYSFGNS KRRKKQHLDG QSDISGSLRI  120
SNETEHEAKE ANSRGVLEEQ LKQLQSEINM LDHRRSQLGV DLEEKSQEAD SLTSKIKELE  180
AQLYKEKEDC KRISSKVKKF VKAHSRNSRI QDQLKRQVRL NKLGDQLALD IYGNDVNEED  240
SSINIVSDGD GETTGFPVTP HNERLNDASP SNIRLEAIRD YAKESKQSAH STRGHLTTSS  300
RPKKLSRWNI HPAQSNFDKK NEAVSNAIGS PKQLANEGKH DRRKTASSSI LSADMLKISE  360
SAPVVPSTSM AAHPVDTEVE IEPEDKIEMV GKASGKIEEG AAYENVSFSL PLPPPPIPKN  420
NYSQYEGDDE IIDVQGAD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.19e-38C3H family protein