PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1193420.m02
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 455aa    MW: 51425.1 Da    PI: 8.2172
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1193420.m02genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.11.1e-06731127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                       +kt+lC  ++r G C + ++C+FaHg+
  Pd.00g1193420.m02  7 FKTKLCVLYQR-GRCAR-ESCSFAHGQ 31
                       69*********.*****.*******97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    
MVERKLFKTK LCVLYQRGRC ARESCSFAHG QAELRRFSGS FDGFNITVHY YVTHVIPCNG  60
RRDSGGDDLR DKLERRYSPR RRYSPERDAR GRHVLRAEYS PSRSLERENF EYSFGNSKRR  120
KKQHLDGQSD ISGSLRISNE TEHEAKEANS RGVLEEQLKQ LQSEINMLDH RRSQLGVDLE  180
EKSQEADSLT SKIKELEAQL YKEKEDCKRI SSKVKKFVKA HSRNSRIQDQ LKRQVRLNKL  240
GDQLALDIYG NDVNEEDSSI NIVSDGDGET TGFPVTPHNE RLNDASPSNI RLEAIRDYAK  300
ESKQSAHSTR GHLTTSSRPK KLSRWNIHPA QSNFDKKNEA VSNAIGSPKQ LANEGKHDRR  360
KTASSSILSA DMLKISESAP VVPSTSMAAH PVDTEVEIEP EDKIEMVGKA SGKIEEGAAY  420
ENVSFSLPLP PPPIPKNNYS QYEGDDEIID VQGAD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.11e-39C3H family protein