PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1193420.m03
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 454aa    MW: 51354.1 Da    PI: 8.2172
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1193420.m03genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.21.1e-06731127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                       +kt+lC  ++r G C + ++C+FaHg+
  Pd.00g1193420.m03  7 FKTKLCVLYQR-GRCAR-ESCSFAHGQ 31
                       69*********.*****.*******97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    
MVERKLFKTK LCVLYQRGRC ARESCSFAHG QAELRRFSGS FDGFNITVHY YVTHVIPCNG  60
RRDSGGDDLR DKLERRYSPR RRYSPERDAR GRHVLREYSP SRSLERENFE YSFGNSKRRK  120
KQHLDGQSDI SGSLRISNET EHEAKEANSR GVLEEQLKQL QSEINMLDHR RSQLGVDLEE  180
KSQEADSLTS KIKELEAQLY KEKEDCKRIS SKVKKFVKAH SRNSRIQDQL KRQVRLNKLG  240
DQLALDIYGN DVNEEDSSIN IVSDGDGETT GFPVTPHNER LNDASPSNIR LEAIRDYAKE  300
SKQSAHSTRG HLTTSSRPKK LSRWNIHPAQ SNFDKKNEAV SNAIGSPKQL ANEGKHDRRK  360
TASSSILSAD MLKISESAPV VPSTSMAAHP VDTEVEIEPE DKIEMVGKAS GKIEEGAAYE  420
NVSFSLPLPP PPIPKNNYSQ YEGDDEIIDV QGAD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.12e-40C3H family protein