PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1193510.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

CO-like

Protein Properties

Length: 424aa MW: 46552.2 Da PI: 6.5811

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1193510.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	25.5	2.8e-08	46	90	4	39
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.........Htv 39 C++++ +++ C d + lC++C ++ H++ H++ Pd.00g1193510.m01 46 LLCDKCNAQPAMVRCMDEKLSLCQSCDQWNHNNgdtttgmggHRT 90 57*****************************88877777777665 PP
2	CCT	63.4	7e-22	368	411	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R++a++RYkeK+ktR F K+irY+sRKa+A++R+RvKGrFvk+ Pd.00g1193510.m01 368 RDKAKMRYKEKKKTRTFGKQIRYASRKARADTRKRVKGRFVKAG 411 899**************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence
MEPLCEFCGV VRAVVYCKSD LARLCLHCDG CVHSANILSR RHPRSLLCDK CNAQPAMVRC 60 MDEKLSLCQS CDQWNHNNGD TTTGMGGHRT HALTCYTGCP SLSEFSRIWS SSLGSAQVPI 120 NDQTNCIGNA LERRDNSERS FGVVTSKLSG SLDQSSCAKF EPWMARSTLI SANPNGIPQG 180 NKDQAPFLPQ ESSLSKGCTN FKDLAIQDSN DLCDGLNIDD VPLNFENAEG IFSCPQGPSR 240 YQFEDGEMDC LLMEKNLSVT ESNGPNDNAV QASSSGPQDC VAFQSSCGSD NVMPAMNGST 300 NCLLMNPNCS RNINLGFPTG QVHSSMSLSL SSMSRESNPD YQDCGLSPIF LTGEPWDSAM 360 EASSPQARDK AKMRYKEKKK TRTFGKQIRY ASRKARADTR KRVKGRFVKA GEEYDYDPLV 420 TRNF

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence

MEPLCEFCGV VRAVVYCKSD LARLCLHCDG CVHSANILSR RHPRSLLCDK CNAQPAMVRC  60
MDEKLSLCQS CDQWNHNNGD TTTGMGGHRT HALTCYTGCP SLSEFSRIWS SSLGSAQVPI  120
NDQTNCIGNA LERRDNSERS FGVVTSKLSG SLDQSSCAKF EPWMARSTLI SANPNGIPQG  180
NKDQAPFLPQ ESSLSKGCTN FKDLAIQDSN DLCDGLNIDD VPLNFENAEG IFSCPQGPSR  240
YQFEDGEMDC LLMEKNLSVT ESNGPNDNAV QASSSGPQDC VAFQSSCGSD NVMPAMNGST  300
NCLLMNPNCS RNINLGFPTG QVHSSMSLSL SSMSRESNPD YQDCGLSPIF LTGEPWDSAM  360
EASSPQARDK AKMRYKEKKK TRTFGKQIRY ASRKARADTR KRVKGRFVKA GEEYDYDPLV  420
TRNF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21880.1	9e-87	CO-like family protein