PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1197880.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MIKC_MADS

Protein Properties

Length: 249aa MW: 28522 Da PI: 6.7155

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1197880.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	96.5	1.1e-30	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+n+qvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++gklye++s Pd.00g1197880.m01 9 KRIENKINQQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSTRGKLYEFCS 59 79***********************************************96 PP
2	K-box	90.4	3.3e-30	82	173	9	100
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + +++++s +q++ +Lk+++e Lqr+qR++lGedL+ L keLqqLe+qL+ sl++iRs+K++++++qi++l + e++l e+n++Lr+klee Pd.00g1197880.m01 82 QPAQDSQSRYQDYVNLKAKVEVLQRTQRNFLGEDLGHLGTKELQQLENQLDMSLRQIRSTKTQVMHSQISDLLREEQMLLEANNELRRKLEE 173 5678899**********************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence
MGRGKVELKR IENKINQQVT FAKRRNGLLK KAYELSVLCD AEVALIVFST RGKLYEFCSG 60 SSMEKTLERY QRCSYSALEA SQPAQDSQSR YQDYVNLKAK VEVLQRTQRN FLGEDLGHLG 120 TKELQQLENQ LDMSLRQIRS TKTQVMHSQI SDLLREEQML LEANNELRRK LEECDAAIER 180 YSWTTEEQNQ NVPNSSHHQA AQFEGVLDHS QCNNTLQIGN NPPAVTDHHE LQSSTQNHSG 240 LIVPGMWVL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15800.1	1e-86	MIKC_MADS family protein