PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g119820.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 514aa MW: 56549.6 Da PI: 8.1571

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g119820.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15	7e-05	81	101	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+k F r nL+ H r H Pd.00g119820.m01 81 CEICNKGFQREQNLQLHRRGH 101 *******************88 PP
2	zf-C2H2	12.5	0.00046	155	177	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H + + Pd.00g119820.m01 155 WKCEKCSKRYAVQSDWKAHSKIC 177 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 514 aa Download sequence
MSNLTCASGD LSASNSSIRN ESSSAGTLYP QQQSSSANDI QQPQQPPPPK KKRNLPGNPD 60 PDAEVIALSP KSLMATNRFL CEICNKGFQR EQNLQLHRRG HNLPWKLKQR TNKEVRKKVY 120 LCPEPTCVHH DPSRALGDLT GIKKHFCRKH GEKKWKCEKC SKRYAVQSDW KAHSKICGTR 180 EYRCDCGTLF SRRDSFITHR AFCDALAQEN STSTAARSAM PASINPLLSS LPQLHTHGLQ 240 GLSVKREQDQ QQQLLPPWLS CLPEGEATAP SGLPSMNMSS PLFSASSFQQ YYSFDHQNPN 300 PSSSSTTTLP DFQQPHTASP HMSATALLQK ASEMGATISK PSHSPMFLKP PSHQARESNE 360 AFDDGFGSND NKSSLFHDMM MMSNSFGDQQ VSSAFGDHRQ AFNGIMVDGN NNLVEIDNNN 420 NNINPPKNYK SMELAQLGRS GTDNNNNDEG LTRDFLGLRA PFSSSAAAAA AASHGHGDFF 480 NINMAGLDHH VNSSSSSAYN GQQSDHQNQT SWQG

Sequence ? help Back to Top

Protein Sequence Length: 514 aa Download sequence

MSNLTCASGD LSASNSSIRN ESSSAGTLYP QQQSSSANDI QQPQQPPPPK KKRNLPGNPD  60
PDAEVIALSP KSLMATNRFL CEICNKGFQR EQNLQLHRRG HNLPWKLKQR TNKEVRKKVY  120
LCPEPTCVHH DPSRALGDLT GIKKHFCRKH GEKKWKCEKC SKRYAVQSDW KAHSKICGTR  180
EYRCDCGTLF SRRDSFITHR AFCDALAQEN STSTAARSAM PASINPLLSS LPQLHTHGLQ  240
GLSVKREQDQ QQQLLPPWLS CLPEGEATAP SGLPSMNMSS PLFSASSFQQ YYSFDHQNPN  300
PSSSSTTTLP DFQQPHTASP HMSATALLQK ASEMGATISK PSHSPMFLKP PSHQARESNE  360
AFDDGFGSND NKSSLFHDMM MMSNSFGDQQ VSSAFGDHRQ AFNGIMVDGN NNLVEIDNNN  420
NNINPPKNYK SMELAQLGRS GTDNNNNDEG LTRDFLGLRA PFSSSAAAAA AASHGHGDFF  480
NINMAGLDHH VNSSSSSAYN GQQSDHQNQT SWQG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	106	118	KLKQRTNKEVRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-109	C2H2 family protein