PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g119830.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 197aa    MW: 22611.3 Da    PI: 6.7821
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g119830.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260113.61.3e-3561052101
            DUF260   2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                       CaaC+++r+kC++dC +apyfpa++ ++f n+hklFG+ +++k+l+++++++r+ a+ s+  eAe r rdPv G+++ i++l +++++++ el
  Pd.00g119830.m01   6 CAACRFQRKKCTQDCLMAPYFPATRFQQFLNAHKLFGVGKITKTLNSVSPQQRSSATYSVKAEAEYRDRDPVGGCYNEIKSLLWKIRTTEDEL 98 
                       ********************************************************************************************* PP

            DUF260  95 allkeel 101
                       ++++++l
  Pd.00g119830.m01  99 QHVHSQL 105
                       **99985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    
MKHQTCAACR FQRKKCTQDC LMAPYFPATR FQQFLNAHKL FGVGKITKTL NSVSPQQRSS  60
ATYSVKAEAE YRDRDPVGGC YNEIKSLLWK IRTTEDELQH VHSQLCMFRA GGENAMAHPL  120
EGYEYKVVQD VEYDSQLHHQ LQQNIVQEQS GVVENHQERS NVFDLRDEVV LEQDVNPIQD  180
EGPVIHNSTS QLQSGKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.13e-37LBD family protein