PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1201120.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 459aa MW: 49834.6 Da PI: 8.2672

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1201120.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.4	9e-12	74	100	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtG C yG++C+F+H++ Pd.00g1201120.m01 74 PGEPDCIYYLRTGLCGYGSNCRFNHPK 100 5789*********************96 PP
2	zf-CCCH	38.5	2e-12	118	142	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +f++tGtCkyG++CkF+H++ Pd.00g1201120.m01 118 QPDCGYFLKTGTCKYGSTCKFHHPR 142 789********************96 PP
3	zf-CCCH	38	2.7e-12	165	187	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C++++rtG Ck+G+ CkF+H++ Pd.00g1201120.m01 165 SCPYYMRTGSCKFGPACKFHHPQ 187 6********************97 PP
4	zf-CCCH	36.1	1.1e-11	303	328	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+f+ tGtCkyG Ck++H++ Pd.00g1201120.m01 303 DQPECRYFMSTGTCKYGIDCKYHHPK 328 689*********************96 PP
5	zf-CCCH	33.4	7.4e-11	345	371	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++ +G+CkyG++C+F H++ Pd.00g1201120.m01 345 PGQPPCSYYIMYGICKYGPTCRFDHPF 371 5899*********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence
MSLIGETERS RAKQNKGRVY TTSVLPMPDT RQALKNAVPN QSDGNVEEAF WRLNINNNQD 60 GGGVAQSNPY PDRPGEPDCI YYLRTGLCGY GSNCRFNHPK YGSQGAQYNG ELPERVGQPD 120 CGYFLKTGTC KYGSTCKFHH PRDRHGAGPV VFNILGLPMH QEEKSCPYYM RTGSCKFGPA 180 CKFHHPQPQS LGTVLPAFGA AGSTVLPSSG LPYAGGLSAW SFPRAPYLSG PRLQSPHSYM 240 PVVLPPQGIV PAHGWNTYVG NISPVTSTGI LGSNLTYSSR TQGESASNGQ VHLSSSSLPH 300 RPDQPECRYF MSTGTCKYGI DCKYHHPKER IAESATHPLG LPSRPGQPPC SYYIMYGICK 360 YGPTCRFDHP FVEHSAGYNF GMNALPLDSA LLSYPRSWSV AHGLETSPSI SSKFPDGVKK 420 PVNNKYENSD TKTAEDSPEQ AGSAPPSPTS SEPVQDQSG

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence

MSLIGETERS RAKQNKGRVY TTSVLPMPDT RQALKNAVPN QSDGNVEEAF WRLNINNNQD  60
GGGVAQSNPY PDRPGEPDCI YYLRTGLCGY GSNCRFNHPK YGSQGAQYNG ELPERVGQPD  120
CGYFLKTGTC KYGSTCKFHH PRDRHGAGPV VFNILGLPMH QEEKSCPYYM RTGSCKFGPA  180
CKFHHPQPQS LGTVLPAFGA AGSTVLPSSG LPYAGGLSAW SFPRAPYLSG PRLQSPHSYM  240
PVVLPPQGIV PAHGWNTYVG NISPVTSTGI LGSNLTYSSR TQGESASNGQ VHLSSSSLPH  300
RPDQPECRYF MSTGTCKYGI DCKYHHPKER IAESATHPLG LPSRPGQPPC SYYIMYGICK  360
YGPTCRFDHP FVEHSAGYNF GMNALPLDSA LLSYPRSWSV AHGLETSPSI SSKFPDGVKK  420
PVNNKYENSD TKTAEDSPEQ AGSAPPSPTS SEPVQDQSG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	1e-117	C3H family protein