PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1203990.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 160aa    MW: 18369.3 Da    PI: 10.2357
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1203990.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.61.4e-27959151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       k+i+n++ rqvtfskRr g++KKA+ELS+LCdae+a+++fs tgkl+e+ s
  Pd.00g1203990.m01  9 KKIDNTTARQVTFSKRRRGLFKKAQELSTLCDAEIALVVFSATGKLFEFTS 59
                       68***********************************************75 PP
2K-box501.3e-17871551583
              K-box  15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 
                        +  +  +a L+kei +  +e+R+l+Ge+L++L++keLq+Le+ L ++l+++R+ K e++l++i  l+ k
  Pd.00g1203990.m01  87 QLESSTSAALRKEIAENTHELRKLMGEELQELNMKELQELEKLLGSGLRRVRDAKGEIVLKEITSLKWK 155
                        5566778899******9***********************************************99976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    
MTRRKIQIKK IDNTTARQVT FSKRRRGLFK KAQELSTLCD AEIALVVFSA TGKLFEFTSS  60
SVQQVIERHG LLSSNFDRLN QPSLELQLES STSAALRKEI AENTHELRKL MGEELQELNM  120
KELQELEKLL GSGLRRVRDA KGEIVLKEIT SLKWKYICCK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-64MIKC_MADS family protein