PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1205830.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 334aa    MW: 36129.8 Da    PI: 6.7924
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1205830.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.00015152174123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C+ C++ Fs++  L  H++ H
  Pd.00g1205830.m01 152 FTCNFCKREFSTSQALGGHQNAH 174
                        89******************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    
MLRMGAELRL ERLSPTSEAS NISATSDDLP PTKKNGPENL NQKLKEKIVI DDSDDDDTQQ  60
PPQQPPPPPV VSSSSSPSPS SRLRLDLKLC NNESAHGLGS SSRLELNLFN PSNLGSSNPG  120
SSNPVSEYSQ PNETTDENPR GSDDKRSQPR VFTCNFCKRE FSTSQALGGH QNAHKQERAL  180
AKRQQGGLEN MGGVLGHSPF SYYNPYSSLS SPSLYGSFNR SLGVRMDSMI HKPSYPWSST  240
PGFGRFGPSS GAWSSRAGSL LNFQSTMDRL NLEGLHANAP SGISGLPGTS SASRFDKEIG  300
VVHNFGGSNS NSEINRPILG DLLLHLLYCH ENVE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.11e-15C2H2 family protein