PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1206410.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 354aa    MW: 40711.4 Da    PI: 7.6168
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1206410.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.6e-053556223
                       EETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                       +C  Cg++F ++++L +H + H
  Pd.00g1206410.m01 35 VCRVCGRRFYTNETLLNHFKIH 56
                       6*****************9998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    
MIAYANRHAL NYVPQVVRER KERNTVVIRD GELNVCRVCG RRFYTNETLL NHFKIHERQH  60
AKRLNQIESA RGSGRVKLVG KYSMKMEKYK NAALRNHIVD MMDHRRAECL MLVSDDSDFV  120
DVVMEAKLRC LKTVVVGDFG NGALKRVADL GFSWNEILIG KAKKEAVSVV GKWKDRDVLK  180
RLESTYKPDE EQSVHSWDDE IDGESKEEEI EAQNQKLTHL LKGTNGIQRH RNPPLQLRKA  240
ISAFFFPNRP YASETLLKSP LEANILRILR NEEEYQSEYA PPQQPPSKFN SFTVQDRPVE  300
LWMTVRGKFG DTEDIKIEVT MFDGYETVPK TGDDSPGEDV CLHLSMLVDI FQGG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.13e-63C2H2 family protein