PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1207520.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 369aa MW: 43021.5 Da PI: 8.0113

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1207520.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.3	0.001	19	41	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C++Cg + s ks+ ++Hi +H Pd.00g1207520.m01 19 YYCEYCGICRSKKSLITSHILSH 41 89*******************96 PP
2	zf-C2H2	20.1	1.7e-06	64	85	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cg +F+ + +Lk+H+++H Pd.00g1207520.m01 64 TCQECGVTFRKPAHLKQHMQSH 85 6*******************99 PP
3	zf-C2H2	16	3.4e-05	91	115	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y C+ dC+ s++rk++L+rH+ H Pd.00g1207520.m01 91 YICSvdDCHSSYRRKDHLNRHLLQH 115 89*******************9887 PP
4	zf-C2H2	13.8	0.00018	120	145	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 +kCp +C++ F + n++rH + H Pd.00g1207520.m01 120 FKCPieNCNREFGFQGNMTRHVNElH 145 89*******************99888 PP
5	zf-C2H2	15.6	4.6e-05	160	184	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C+ Cgk+F+ s L++H +H Pd.00g1207520.m01 160 HVCKeiGCGKVFRFASRLRKHEDSH 184 79*******************9888 PP
6	zf-C2H2	16.1	3.1e-05	251	275	2	23
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kC C+ +F++ksnL +H + H Pd.00g1207520.m01 251 KCDykGCHHTFTTKSNLAKHVKAvH 275 688889**************99877 PP

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence
MDKGQAEMEG PIFRDIRRYY CEYCGICRSK KSLITSHILS HHKDEMEMSN VDEDREVEQE 60 KSNTCQECGV TFRKPAHLKQ HMQSHSLERP YICSVDDCHS SYRRKDHLNR HLLQHQGKLF 120 KCPIENCNRE FGFQGNMTRH VNELHSEDSP STNGGAQKQH VCKEIGCGKV FRFASRLRKH 180 EDSHVKLDTV GAFCSEPGCM KHFTNEQCLQ AHIHSCHQHT TCEICGSKQL RNNIKRHLLT 240 HEDKHSIERI KCDYKGCHHT FTTKSNLAKH VKAVHLEHKP FVCSFSGCGL RFAYKHVRDN 300 HEKTGCHVYT QGDFEEADEQ FRLRPRGGRK RECPDIPMLV RKRVTPPNQL GQESEYMSWL 360 HSQEDNDEQ

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence

MDKGQAEMEG PIFRDIRRYY CEYCGICRSK KSLITSHILS HHKDEMEMSN VDEDREVEQE  60
KSNTCQECGV TFRKPAHLKQ HMQSHSLERP YICSVDDCHS SYRRKDHLNR HLLQHQGKLF  120
KCPIENCNRE FGFQGNMTRH VNELHSEDSP STNGGAQKQH VCKEIGCGKV FRFASRLRKH  180
EDSHVKLDTV GAFCSEPGCM KHFTNEQCLQ AHIHSCHQHT TCEICGSKQL RNNIKRHLLT  240
HEDKHSIERI KCDYKGCHHT FTTKSNLAKH VKAVHLEHKP FVCSFSGCGL RFAYKHVRDN  300
HEKTGCHVYT QGDFEEADEQ FRLRPRGGRK RECPDIPMLV RKRVTPPNQL GQESEYMSWL  360
HSQEDNDEQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.2	1e-149	C2H2 family protein