PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1207520.m02

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 401aa MW: 46859.8 Da PI: 7.7403

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1207520.m02	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.2	0.0012	19	41	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C++Cg + s ks+ ++Hi +H Pd.00g1207520.m02 19 YYCEYCGICRSKKSLITSHILSH 41 89*******************96 PP
2	zf-C2H2	20	1.8e-06	64	85	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cg +F+ + +Lk+H+++H Pd.00g1207520.m02 64 TCQECGVTFRKPAHLKQHMQSH 85 6*******************99 PP
3	zf-C2H2	15.9	3.8e-05	123	147	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y C+ dC+ s++rk++L+rH+ H Pd.00g1207520.m02 123 YICSvdDCHSSYRRKDHLNRHLLQH 147 89*******************9887 PP
4	zf-C2H2	13.6	0.0002	152	177	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 +kCp +C++ F + n++rH + H Pd.00g1207520.m02 152 FKCPieNCNREFGFQGNMTRHVNElH 177 89*******************99888 PP
5	zf-C2H2	15.5	5.1e-05	192	216	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C+ Cgk+F+ s L++H +H Pd.00g1207520.m02 192 HVCKeiGCGKVFRFASRLRKHEDSH 216 79*******************9888 PP
6	zf-C2H2	16	3.5e-05	283	307	2	23
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kC C+ +F++ksnL +H + H Pd.00g1207520.m02 283 KCDykGCHHTFTTKSNLAKHVKAvH 307 688889**************99877 PP

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence
MDKGQAEMEG PIFRDIRRYY CEYCGICRSK KSLITSHILS HHKDEMEMSN VDEDREVEQE 60 KSNTCQECGV TFRKPAHLKQ HMQSHSLEES TYMKYIRWIA WETSCEAPSS EPQSLTVWFE 120 RPYICSVDDC HSSYRRKDHL NRHLLQHQGK LFKCPIENCN REFGFQGNMT RHVNELHSED 180 SPSTNGGAQK QHVCKEIGCG KVFRFASRLR KHEDSHVKLD TVGAFCSEPG CMKHFTNEQC 240 LQAHIHSCHQ HTTCEICGSK QLRNNIKRHL LTHEDKHSIE RIKCDYKGCH HTFTTKSNLA 300 KHVKAVHLEH KPFVCSFSGC GLRFAYKHVR DNHEKTGCHV YTQGDFEEAD EQFRLRPRGG 360 RKRECPDIPM LVRKRVTPPN QLGQESEYMS WLHSQEDNDE Q

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence

MDKGQAEMEG PIFRDIRRYY CEYCGICRSK KSLITSHILS HHKDEMEMSN VDEDREVEQE  60
KSNTCQECGV TFRKPAHLKQ HMQSHSLEES TYMKYIRWIA WETSCEAPSS EPQSLTVWFE  120
RPYICSVDDC HSSYRRKDHL NRHLLQHQGK LFKCPIENCN REFGFQGNMT RHVNELHSED  180
SPSTNGGAQK QHVCKEIGCG KVFRFASRLR KHEDSHVKLD TVGAFCSEPG CMKHFTNEQC  240
LQAHIHSCHQ HTTCEICGSK QLRNNIKRHL LTHEDKHSIE RIKCDYKGCH HTFTTKSNLA  300
KHVKAVHLEH KPFVCSFSGC GLRFAYKHVR DNHEKTGCHV YTQGDFEEAD EQFRLRPRGG  360
RKRECPDIPM LVRKRVTPPN QLGQESEYMS WLHSQEDNDE Q

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.2	1e-143	C2H2 family protein